Variant report

Variant	rs57531394
Chromosome Location	chr4:153084453-153084454
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs72953090	0.89[AFR][1000 genomes]
rs72953091	0.84[AFR][1000 genomes]
rs72953095	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880341	chr4:152861685-153110256	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv931416	chr4:152877808-153440553	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv880774	chr4:153035743-153121818	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:153076400-153085600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr4:153078000-153085800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr4:153078000-153090600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr4:153082000-153084800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr4:153082000-153085600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr4:153083400-153085800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr4:153083400-153085800	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr4:153083400-153086000	Weak transcription	NH-A	brain
9	chr4:153083400-153086200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr4:153083800-153085800	Weak transcription	HMEC	breast
11	chr4:153083800-153089000	Weak transcription	Right Atrium	heart
12	chr4:153084000-153084600	Enhancers	Thymus	Thymus
13	chr4:153084000-153085000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr4:153084000-153085600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr4:153084000-153085800	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr4:153084000-153085800	Weak transcription	HSMMtube	muscle
17	chr4:153084200-153085200	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr4:153084200-153085600	Weak transcription	HUES6 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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