Variant report

Variant	rs5753481
Chromosome Location	chr22:31547117-31547118
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1034587	0.90[CEU][hapmap]
rs2079430	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2413030	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4618154	0.90[CEU][hapmap];0.87[CHB][hapmap]
rs4820944	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs5749231	0.90[CEU][hapmap]
rs5753474	0.81[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.90[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs5753480	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5753482	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs5997940	0.90[CEU][hapmap]
rs62237392	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs730286	0.90[CEU][hapmap];0.87[CHB][hapmap]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31545200-31551000	Weak transcription	Fetal Muscle Leg	muscle
2	chr22:31545200-31555400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr22:31545200-31555600	Weak transcription	Fetal Intestine Small	intestine
4	chr22:31545400-31549600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr22:31545400-31549800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr22:31545400-31550800	Weak transcription	Ovary	ovary
7	chr22:31545400-31551000	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr22:31545400-31551000	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr22:31545600-31550800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr22:31545600-31551000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr22:31545600-31551000	Weak transcription	Colon Smooth Muscle	Colon
12	chr22:31546200-31547600	Enhancers	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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