Variant report

Variant rs575354200
Chromosome Location chr6:29924208-29924209
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:57 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:29913400-29932200 Weak transcription Brain Anterior Caudate brain
2 chr6:29913400-29932600 Weak transcription Brain Substantia Nigra brain
3 chr6:29913600-29924400 Weak transcription H1 Cell Line embryonic stem cell
4 chr6:29913600-29925400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
5 chr6:29913800-29932200 Weak transcription Small Intestine intestine
6 chr6:29914000-29932200 Weak transcription Colon Smooth Muscle Colon
7 chr6:29914600-29932200 Weak transcription Colonic Mucosa Colon
8 chr6:29914800-29932200 Weak transcription Right Ventricle heart
9 chr6:29915400-29931800 Weak transcription Fetal Thymus thymus
10 chr6:29915600-29932000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
11 chr6:29916400-29926400 Weak transcription GM12878-XiMat blood
12 chr6:29916800-29924400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
13 chr6:29916800-29928200 Weak transcription HepG2 liver
14 chr6:29916800-29930000 Weak transcription Primary T regulatory cells fromperipheralblood blood
15 chr6:29916800-29932200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
16 chr6:29916800-29932200 Weak transcription Rectal Mucosa Donor 31 rectum
17 chr6:29916800-29932200 Weak transcription Sigmoid Colon Sigmoid Colon
18 chr6:29916800-29933000 Weak transcription Esophagus oesophagus
19 chr6:29916800-29933000 Weak transcription Pancreas Pancrea
20 chr6:29916800-29933200 Weak transcription Lung lung
21 chr6:29916800-29940200 Weak transcription Gastric stomach
22 chr6:29917000-29926800 Weak transcription Primary hematopoietic stem cells short term culture blood
23 chr6:29917000-29931800 Weak transcription Primary T helper cells fromperipheralblood blood
24 chr6:29917200-29926000 Weak transcription Adipose Nuclei Adipose
25 chr6:29917200-29926000 Weak transcription Spleen Spleen
26 chr6:29917200-29932000 Weak transcription Primary T helper naive cells fromperipheralblood blood
27 chr6:29917200-29932200 Weak transcription Liver Liver
28 chr6:29917200-29932200 Weak transcription Brain Hippocampus Middle brain
29 chr6:29917400-29927400 Weak transcription Fetal Muscle Leg muscle
30 chr6:29917800-29926400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
31 chr6:29917800-29932200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
32 chr6:29918000-29926000 Weak transcription Monocytes-CD14+_RO01746 blood
33 chr6:29918000-29926600 Weak transcription Primary B cells from peripheral blood blood
34 chr6:29918000-29926600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
35 chr6:29918000-29932000 Weak transcription Primary T killer naive cells fromperipheralblood blood
36 chr6:29918000-29932200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
37 chr6:29918000-29932200 Weak transcription Fetal Intestine Small intestine
38 chr6:29918200-29925600 Weak transcription Rectal Mucosa Donor 29 rectum
39 chr6:29918200-29926600 Weak transcription Primary monocytes fromperipheralblood blood
40 chr6:29918200-29931800 Weak transcription Primary T cells from cord blood blood
41 chr6:29918400-29925600 Weak transcription Primary neutrophils fromperipheralblood blood
42 chr6:29918400-29927400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
43 chr6:29919000-29926800 Weak transcription Primary B cells from cord blood blood
44 chr6:29920400-29932200 Weak transcription Duodenum Smooth Muscle Duodenum
45 chr6:29921800-29926000 Weak transcription Skeletal Muscle Female skeletal muscle
46 chr6:29921800-29929400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
47 chr6:29921800-29929600 Weak transcription Psoas Muscle Psoas
48 chr6:29921800-29932200 Weak transcription Skeletal Muscle Male skeletal muscle
49 chr6:29922000-29929600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
50 chr6:29922400-29927600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived

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