Variant report

Variant	rs575355012
Chromosome Location	chr18:45661365-45661366
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr18:45610278..45611790-chr18:45660940..45662780,2	MCF-7	breast:
2	chr18:45659738..45661837-chr18:45663620..45665131,2	MCF-7	breast:
3	chr18:45658580..45662145-chr18:45664603..45667810,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000184828	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909616	chr18:45467806-45844500	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	esv3337566	chr18:45661104-45665102	Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45646200-45662000	Weak transcription	Right Atrium	heart
2	chr18:45658800-45662000	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr18:45659000-45661400	Enhancers	Sigmoid Colon	Sigmoid Colon
4	chr18:45659400-45661400	Enhancers	Duodenum Mucosa	Duodenum
5	chr18:45659400-45661600	Enhancers	Ovary	ovary
6	chr18:45659600-45662000	Enhancers	Stomach Mucosa	stomach
7	chr18:45659800-45661800	Weak transcription	Colonic Mucosa	Colon
8	chr18:45659800-45661800	Weak transcription	Lung	lung
9	chr18:45660200-45662200	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr18:45660400-45662200	Weak transcription	Pancreas	Pancrea
11	chr18:45660400-45662600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr18:45660400-45662600	Enhancers	Dnd41	blood
13	chr18:45660600-45662000	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
14	chr18:45660800-45661400	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
15	chr18:45660800-45661600	Enhancers	Spleen	Spleen
16	chr18:45660800-45662000	Weak transcription	Liver	Liver
17	chr18:45660800-45662000	Bivalent Enhancer	Brain Germinal Matrix	brain
18	chr18:45660800-45662000	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr18:45660800-45662000	Bivalent Enhancer	Fetal Stomach	stomach
20	chr18:45660800-45665000	Active TSS	Rectal Smooth Muscle	rectum
21	chr18:45661000-45661400	Flanking Active TSS	Esophagus	oesophagus
22	chr18:45661000-45662000	Weak transcription	Fetal Kidney	kidney
23	chr18:45661000-45662000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
24	chr18:45661200-45661400	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr18:45661200-45661400	Enhancers	Left Ventricle	heart
26	chr18:45661200-45661400	Enhancers	Skeletal Muscle Female	skeletal muscle
27	chr18:45661200-45661800	Enhancers	Hela-S3	cervix
28	chr18:45661200-45662000	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr18:45661200-45662000	Weak transcription	Gastric	stomach
30	chr18:45661200-45662200	Weak transcription	HMEC	breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links