Variant report

Variant	rs575362151
Chromosome Location	chr1:86315820-86315821
allele	-/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:86173527..86174504-chr1:86315716..86316608,2	MCF-7	breast:
2	chr1:85773662..85774295-chr1:86315658..86316288,2	MCF-7	breast:
3	chr1:86046089..86048406-chr1:86314306..86316948,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000142871	Chromatin interaction
ENSG00000117174	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006994	chr1:85454304-86327679	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	esv3391173	chr1:86005637-86337469	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv817212	chr1:86127851-86658426	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv546721	chr1:86226352-86392577	Weak transcription Strong transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv999743	chr1:86241246-86364846	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv1011293	chr1:86270649-86416972	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv546722	chr1:86278315-86891073	Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
8	nsv871189	chr1:86315724-86402244	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:86305000-86332600	Weak transcription	Fetal Lung	lung
2	chr1:86305200-86326600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr1:86315000-86317200	Enhancers	Muscle Satellite Cultured Cells	--
4	chr1:86315200-86316400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr1:86315200-86316400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr1:86315200-86316400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr1:86315200-86316400	Enhancers	Hela-S3	cervix
8	chr1:86315200-86316600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr1:86315200-86316600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr1:86315200-86316600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr1:86315200-86316600	Enhancers	HSMM	muscle
12	chr1:86315200-86316600	Enhancers	NHDF-Ad	bronchial
13	chr1:86315200-86316600	Enhancers	Osteobl	bone
14	chr1:86315200-86317400	Enhancers	Dnd41	blood
15	chr1:86315400-86316400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr1:86315400-86316400	Enhancers	HMEC	breast
17	chr1:86315400-86316400	Enhancers	HSMMtube	muscle
18	chr1:86315400-86316600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr1:86315600-86316000	Flanking Active TSS	NH-A	brain
20	chr1:86315600-86316200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr1:86315600-86316200	Active TSS	A549	lung
22	chr1:86315800-86316000	Enhancers	Primary hematopoietic stem cells	blood
23	chr1:86315800-86316200	Enhancers	HUVEC	blood vessel
24	chr1:86315800-86316200	Flanking Active TSS	NHEK	skin
25	chr1:86315800-86316400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr1:86315800-86316600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr1:86315800-86316600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr1:86315800-86316600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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