Variant report

Variant	rs5753756
Chromosome Location	chr22:32091577-32091578
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs138280	0.85[CHB][hapmap];0.95[JPT][hapmap]
rs138289	0.89[JPT][hapmap]
rs17821493	1.00[TSI][hapmap]
rs2006648	0.90[CHB][hapmap];0.97[CHD][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs4820988	0.90[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs5749328	0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6518754	0.90[CHB][hapmap];0.97[CHD][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32073200-32098600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr22:32073400-32111800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr22:32074400-32100400	Weak transcription	K562	blood
4	chr22:32076600-32107600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr22:32077200-32108000	Weak transcription	Psoas Muscle	Psoas
6	chr22:32077200-32109200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr22:32078000-32111400	Strong transcription	Fetal Intestine Small	intestine
8	chr22:32078200-32093200	Strong transcription	Fetal Intestine Large	intestine
9	chr22:32078400-32093800	Strong transcription	Sigmoid Colon	Sigmoid Colon
10	chr22:32078400-32101200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr22:32078400-32101200	Strong transcription	Placenta	Placenta
12	chr22:32078400-32111800	Strong transcription	Fetal Stomach	stomach
13	chr22:32078600-32102200	Strong transcription	Thymus	Thymus
14	chr22:32078800-32094200	Strong transcription	Liver	Liver
15	chr22:32078800-32094200	Strong transcription	Duodenum Mucosa	Duodenum
16	chr22:32078800-32102800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr22:32078800-32107800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr22:32078800-32126000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr22:32079000-32099000	Weak transcription	Small Intestine	intestine
20	chr22:32079000-32113800	Strong transcription	Fetal Muscle Trunk	muscle
21	chr22:32080400-32101600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr22:32080400-32121400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr22:32081200-32126400	Weak transcription	Stomach Mucosa	stomach
24	chr22:32081600-32110600	Weak transcription	Hela-S3	cervix
25	chr22:32082000-32093400	Weak transcription	Esophagus	oesophagus
26	chr22:32082800-32097200	Weak transcription	Right Ventricle	heart
27	chr22:32083000-32096200	Weak transcription	Colon Smooth Muscle	Colon
28	chr22:32086000-32092800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr22:32086400-32093600	Strong transcription	Cortex derived primary cultured neurospheres	brain
30	chr22:32086400-32101000	Strong transcription	Rectal Mucosa Donor 29	rectum
31	chr22:32086400-32101200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr22:32087000-32101200	Strong transcription	HUES48 Cell Line	embryonic stem cell
33	chr22:32087000-32101200	Strong transcription	HUES6 Cell Line	embryonic stem cell
34	chr22:32087200-32092000	Strong transcription	Left Ventricle	heart
35	chr22:32087200-32101200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr22:32087200-32101200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr22:32087200-32101200	Strong transcription	Dnd41	blood
38	chr22:32087400-32091800	Strong transcription	HSMM	muscle
39	chr22:32087400-32094400	Strong transcription	Fetal Lung	lung
40	chr22:32087400-32094800	Strong transcription	Primary T cells from cord blood	blood
41	chr22:32087400-32101000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
42	chr22:32087400-32101200	Strong transcription	HUES64 Cell Line	embryonic stem cell
43	chr22:32087400-32101200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
44	chr22:32087400-32101200	Strong transcription	Fetal Muscle Leg	muscle
45	chr22:32087400-32101800	Strong transcription	Fetal Thymus	thymus
46	chr22:32087400-32103800	Strong transcription	Primary B cells from peripheral blood	blood
47	chr22:32087600-32092000	Strong transcription	Primary B cells from cord blood	blood
48	chr22:32087600-32092600	Strong transcription	Fetal Brain Female	brain
49	chr22:32088000-32093200	Strong transcription	Duodenum Smooth Muscle	Duodenum
50	chr22:32088000-32094000	Strong transcription	Skeletal Muscle Female	skeletal muscle

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