Variant report

Variant	rs575377217
Chromosome Location	chr1:56055792-56055793
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv10184	chr1:55728755-56084833	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv523489	chr1:56038407-56066503	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv461617	chr1:56055190-56123510	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv546303	chr1:56055190-56123510	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56040600-56058600	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr1:56050800-56057800	Weak transcription	Right Ventricle	heart
3	chr1:56051000-56055800	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr1:56051200-56057200	Weak transcription	Fetal Heart	heart
5	chr1:56052600-56057800	Weak transcription	Colon Smooth Muscle	Colon
6	chr1:56052800-56060400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr1:56053800-56056000	Enhancers	Fetal Stomach	stomach
8	chr1:56053800-56058400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr1:56053800-56058400	Enhancers	NHDF-Ad	bronchial
10	chr1:56054000-56055800	Enhancers	Muscle Satellite Cultured Cells	--
11	chr1:56054400-56059000	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr1:56054600-56058000	Weak transcription	Aorta	Aorta
13	chr1:56055000-56056200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr1:56055000-56056200	Enhancers	Fetal Muscle Leg	muscle
15	chr1:56055000-56056200	Enhancers	HMEC	breast
16	chr1:56055200-56056000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr1:56055200-56056000	Flanking Active TSS	Osteobl	bone
18	chr1:56055200-56056200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr1:56055200-56056200	Enhancers	Adipose Nuclei	Adipose
20	chr1:56055200-56056200	Enhancers	Fetal Muscle Trunk	muscle
21	chr1:56055200-56056200	Enhancers	HSMM	muscle
22	chr1:56055400-56055800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr1:56055400-56056000	Enhancers	Fetal Lung	lung
24	chr1:56055400-56056000	Enhancers	Psoas Muscle	Psoas
25	chr1:56055400-56056200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr1:56055400-56056200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr1:56055400-56056200	Enhancers	NHLF	lung
28	chr1:56055400-56056400	Enhancers	Ovary	ovary
29	chr1:56055600-56056000	Weak transcription	Right Atrium	heart
30	chr1:56055600-56056200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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