Variant report

Variant	rs575382731
Chromosome Location	chr5:74316210-74316211
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830352	chr5:74189495-74337944	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1018865	chr5:74246293-74494552	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv969994	chr5:74314591-74330479	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74313600-74318200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr5:74313600-74341800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr5:74314600-74324800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr5:74315200-74320400	Enhancers	Stomach Mucosa	stomach
5	chr5:74315200-74332800	Weak transcription	NHDF-Ad	bronchial
6	chr5:74315600-74317000	Weak transcription	Fetal Intestine Large	intestine
7	chr5:74315600-74318000	Enhancers	HepG2	liver
8	chr5:74315800-74317400	Enhancers	Pancreas	Pancrea
9	chr5:74316000-74316400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr5:74316000-74316400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr5:74316000-74316400	Enhancers	Placenta	Placenta
12	chr5:74316000-74317400	Enhancers	Gastric	stomach
13	chr5:74316000-74317400	Enhancers	Sigmoid Colon	Sigmoid Colon
14	chr5:74316200-74316400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr5:74316200-74319400	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr5:74316200-74319600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr5:74316200-74324200	Weak transcription	Duodenum Mucosa	Duodenum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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