Variant report

Variant rs575408648
Chromosome Location chr21:46876479-46876480
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:70 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr21:46859800-46880000 Weak transcription HUVEC blood vessel
2 chr21:46860000-46888200 Weak transcription iPS-18 Cell Line embryonic stem cell
3 chr21:46862000-46887600 Weak transcription iPS-15b Cell Line embryonic stem cell
4 chr21:46866600-46880000 Weak transcription ES-I3 Cell Line embryonic stem cell
5 chr21:46868600-46881600 Weak transcription HUES64 Cell Line embryonic stem cell
6 chr21:46873000-46879600 Weak transcription A549 lung
7 chr21:46873000-46879800 Weak transcription iPS-20b Cell Line embryonic stem cell
8 chr21:46873400-46879800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
9 chr21:46873400-46880600 Weak transcription K562 blood
10 chr21:46873400-46880800 Weak transcription Fetal Kidney kidney
11 chr21:46873400-46881600 Genic enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
12 chr21:46874600-46877000 Weak transcription Gastric stomach
13 chr21:46874800-46879400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
14 chr21:46875200-46877000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
15 chr21:46875200-46877000 Bivalent/Poised TSS Duodenum Smooth Muscle Duodenum
16 chr21:46875200-46877200 Genic enhancers Foreskin Fibroblast Primary Cells skin01 Skin
17 chr21:46875200-46877800 Active TSS Colon Smooth Muscle Colon
18 chr21:46875200-46877800 Active TSS Rectal Smooth Muscle rectum
19 chr21:46875400-46877000 Strong transcription H1 Cell Line embryonic stem cell
20 chr21:46875400-46877000 Active TSS Liver Liver
21 chr21:46875400-46877400 Strong transcription H9 Cell Line embryonic stem cell
22 chr21:46875400-46879200 Strong transcription HUES6 Cell Line embryonic stem cell
23 chr21:46875400-46880400 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
24 chr21:46875600-46876800 Active TSS Stomach Smooth Muscle stomach
25 chr21:46875600-46877200 Weak transcription HepG2 liver
26 chr21:46875600-46878600 Active TSS Brain Substantia Nigra brain
27 chr21:46875600-46880000 Weak transcription NHDF-Ad bronchial
28 chr21:46875600-46881400 Genic enhancers IMR90 fetal lung fibroblasts Cell Line lung
29 chr21:46875800-46876600 Bivalent Enhancer Foreskin Keratinocyte Primary Cells skin03 Skin
30 chr21:46875800-46878200 Weak transcription HSMMtube muscle
31 chr21:46875800-46878400 Strong transcription Foreskin Melanocyte Primary Cells skin01 Skin
32 chr21:46875800-46879600 Weak transcription Fetal Intestine Small intestine
33 chr21:46875800-46879800 Weak transcription Aorta Aorta
34 chr21:46875800-46880000 Strong transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
35 chr21:46876000-46876600 Enhancers Fetal Lung lung
36 chr21:46876000-46876800 Bivalent/Poised TSS Skeletal Muscle Male skeletal muscle
37 chr21:46876000-46877200 Enhancers Spleen Spleen
38 chr21:46876000-46878600 Genic enhancers iPS DF 19.11 Cell Line embryonic stem cell
39 chr21:46876000-46879600 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
40 chr21:46876000-46879600 Weak transcription Fetal Intestine Large intestine
41 chr21:46876000-46879600 Weak transcription NH-A brain
42 chr21:46876000-46880000 Weak transcription Muscle Satellite Cultured Cells --
43 chr21:46876000-46880000 Weak transcription Osteobl bone
44 chr21:46876000-46886800 Weak transcription NHEK skin
45 chr21:46876200-46876600 Bivalent Enhancer Skeletal Muscle Female skeletal muscle
46 chr21:46876200-46877000 Weak transcription Brain Cingulate Gyrus brain
47 chr21:46876200-46877400 Enhancers Adipose Nuclei Adipose
48 chr21:46876200-46877400 Strong transcription Fetal Stomach stomach
49 chr21:46876200-46877400 Weak transcription HSMM muscle
50 chr21:46876200-46877600 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin

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