Variant report

Variant	rs575412303
Chromosome Location	chr5:95965287-95965288
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:95962754..95968222-chr5:95995730..96000718,6	MCF-7	breast:
2	chr5:95962343..95964474-chr5:95964579..95968462,3	K562	blood:

Variant related genes	Relation type
ENSG00000153113	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030444	chr5:95353620-95995619	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv537810	chr5:95353620-95995619	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1024964	chr5:95742124-96065492	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
4	nsv537811	chr5:95742124-96065492	Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
5	esv3470561	chr5:95964796-95969194	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:95954000-95965400	Weak transcription	Aorta	Aorta
2	chr5:95958400-95965400	Weak transcription	NHLF	lung
3	chr5:95961200-95966200	Enhancers	HSMM	muscle
4	chr5:95961200-95966200	Enhancers	NH-A	brain
5	chr5:95961200-95966400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr5:95961200-95966600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr5:95961200-95967200	Enhancers	HMEC	breast
8	chr5:95961400-95967000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr5:95962000-95966200	Enhancers	HSMMtube	muscle
10	chr5:95962000-95966400	Enhancers	Osteobl	bone
11	chr5:95962200-95967000	Enhancers	Muscle Satellite Cultured Cells	--
12	chr5:95962400-95965600	Weak transcription	Right Atrium	heart
13	chr5:95963400-95966400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr5:95963400-95966800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr5:95963400-95967000	Enhancers	Hela-S3	cervix
16	chr5:95964200-95965400	Enhancers	Fetal Lung	lung
17	chr5:95964200-95966200	Enhancers	Stomach Mucosa	stomach
18	chr5:95964400-95965400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr5:95964600-95965400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr5:95964800-95965600	Enhancers	A549	lung
21	chr5:95964800-95966400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr5:95965000-95965400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr5:95965000-95965400	Weak transcription	Fetal Heart	heart
24	chr5:95965000-95965800	Enhancers	HepG2	liver
25	chr5:95965000-95966000	Flanking Active TSS	NHEK	skin
26	chr5:95965000-95966200	Enhancers	HUVEC	blood vessel
27	chr5:95965000-95966200	Enhancers	NHDF-Ad	bronchial
28	chr5:95965200-95965400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr5:95965200-95966000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr5:95965200-95966200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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