Variant report

Variant	rs5754274
Chromosome Location	chr22:33173569-33173570
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs5754266	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5754281	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1061384	chr22:33165464-33191811	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33151000-33175400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr22:33168200-33175800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr22:33169200-33175400	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr22:33171600-33174800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr22:33171800-33174200	Enhancers	Fetal Thymus	thymus
6	chr22:33171800-33175000	Enhancers	HepG2	liver
7	chr22:33172000-33173600	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr22:33172600-33175400	Weak transcription	Liver	Liver
9	chr22:33173000-33174000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr22:33173000-33174000	Weak transcription	Adipose Nuclei	Adipose
11	chr22:33173000-33174000	Weak transcription	Spleen	Spleen
12	chr22:33173000-33175600	Weak transcription	Pancreas	Pancrea
13	chr22:33173400-33173800	Weak transcription	Primary hematopoietic stem cells	blood
14	chr22:33173400-33173800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr22:33173400-33177400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr22:33173400-33179000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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