Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11704745	0.93[CEU][hapmap];0.88[YRI][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1427376	0.87[CEU][hapmap];0.88[YRI][hapmap];0.88[AMR][1000 genomes]
rs1543803	0.80[AMR][1000 genomes]
rs1543804	0.80[AMR][1000 genomes]
rs17778906	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1991375	0.83[GIH][hapmap]
rs2899196	0.80[AMR][1000 genomes]
rs4608622	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4999923	0.87[CEU][hapmap];0.88[YRI][hapmap];0.88[AMR][1000 genomes]
rs5749530	1.00[CHB][hapmap]
rs5749531	0.80[AMR][1000 genomes]
rs5754315	0.80[AMR][1000 genomes]
rs5754317	1.00[CHB][hapmap]
rs5754319	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs5754320	1.00[CHB][hapmap]
rs5754322	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs5998584	1.00[CHB][hapmap]
rs5998585	1.00[CHB][hapmap]
rs5998588	1.00[CHB][hapmap]
rs5998589	1.00[CHB][hapmap]
rs5998590	1.00[CHB][hapmap]
rs9621584	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv3599	chr22:33230106-33274789	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33227000-33272400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr22:33237400-33282200	Weak transcription	Fetal Brain Female	brain
3	chr22:33257800-33282000	Weak transcription	HepG2	liver
4	chr22:33259000-33270800	Weak transcription	Fetal Lung	lung
5	chr22:33265200-33282000	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr22:33265600-33287000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr22:33268600-33270800	Enhancers	K562	blood
8	chr22:33269400-33272400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr22:33269400-33272400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr22:33269600-33271400	Enhancers	Fetal Intestine Small	intestine
11	chr22:33269600-33272200	Enhancers	Fetal Thymus	thymus
12	chr22:33270000-33271600	Enhancers	Fetal Intestine Large	intestine
13	chr22:33270000-33272400	Enhancers	Primary hematopoietic stem cells	blood
14	chr22:33270200-33271400	Enhancers	Fetal Muscle Trunk	muscle
15	chr22:33270200-33271800	Enhancers	Fetal Heart	heart
16	chr22:33270200-33272000	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr22:33270200-33274000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr22:33270400-33270800	Strong transcription	H1 Cell Line	embryonic stem cell

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