Variant report

Variant	rs575441409
Chromosome Location	chr2:171730237-171730238
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:171729910..171732029-chr2:171733045..171735260,2	MCF-7	breast:
2	chr2:171092223..171093153-chr2:171729363..171730378,4	K562	blood:
3	chr2:171727055..171729021-chr2:171729761..171731412,2	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508179	chr2:171708404-171736003	Enhancers Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv431801	chr2:171721493-171966493	ZNF genes & repeats Strong transcription Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv526140	chr2:171729643-171732497	Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:171729200-171730600	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr2:171729400-171730400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr2:171729400-171730400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr2:171729600-171730400	Enhancers	Primary T helper naive cells from peripheral blood	blood
5	chr2:171729600-171730400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr2:171729800-171730400	Enhancers	Spleen	Spleen
7	chr2:171730000-171730400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr2:171730000-171730400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr2:171730000-171730400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
10	chr2:171730000-171730400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr2:171730000-171730400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
12	chr2:171730000-171730400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr2:171730000-171730400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr2:171730000-171730400	Enhancers	Fetal Thymus	thymus
15	chr2:171730000-171730400	Enhancers	Thymus	Thymus
16	chr2:171730000-171730400	Enhancers	GM12878-XiMat	blood
17	chr2:171730000-171730600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr2:171730000-171734600	Weak transcription	NH-A	brain
19	chr2:171730200-171730400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr2:171730200-171730400	Enhancers	Primary T killer memory cells from peripheral blood	blood
21	chr2:171730200-171730400	Enhancers	Duodenum Mucosa	Duodenum
22	chr2:171730200-171730400	Enhancers	Rectal Mucosa Donor 29	rectum
23	chr2:171730200-171730400	Enhancers	Dnd41	blood
24	chr2:171730200-171730400	Enhancers	HepG2	liver
25	chr2:171730200-171730600	Enhancers	Primary T helper cells PMA-I stimulated	--
26	chr2:171730200-171732600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr2:171730200-171734200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr2:171730200-171734400	Weak transcription	Pancreas	Pancrea
29	chr2:171730200-171734600	Weak transcription	Primary B cells from peripheral blood	blood
30	chr2:171730200-171734600	Weak transcription	Hela-S3	cervix
31	chr2:171730200-171735000	Weak transcription	Monocytes-CD14+_RO01746	blood

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