Variant report

Variant	rs57544150
Chromosome Location	chr15:92748433-92748434
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:92640863..92641506-chr15:92748069..92748727,2	MCF-7	breast:
2	chr15:92748352..92748892-chr15:92768787..92769480,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000176463	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs28867505	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3956218	0.80[AFR][1000 genomes]
rs60648369	0.84[ASN][1000 genomes]
rs62009280	0.87[ASN][1000 genomes]
rs8031462	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948621	chr15:92688981-93158095	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92741400-92748600	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr15:92748200-92748600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr15:92748200-92748600	Enhancers	Right Atrium	heart
4	chr15:92748200-92748800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
5	chr15:92748200-92748800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr15:92748200-92748800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr15:92748200-92749000	Enhancers	H1 Cell Line	embryonic stem cell
8	chr15:92748200-92749000	Enhancers	Left Ventricle	heart
9	chr15:92748200-92749200	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr15:92748200-92749200	Enhancers	Brain Substantia Nigra	brain
11	chr15:92748200-92749400	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr15:92748200-92749400	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr15:92748200-92749400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr15:92748400-92748800	Enhancers	H9 Cell Line	embryonic stem cell
15	chr15:92748400-92748800	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr15:92748400-92748800	Enhancers	Fetal Heart	heart
17	chr15:92748400-92749000	Enhancers	Brain Angular Gyrus	brain
18	chr15:92748400-92749000	Enhancers	Brain Anterior Caudate	brain
19	chr15:92748400-92749000	Enhancers	Brain Cingulate Gyrus	brain
20	chr15:92748400-92749200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr15:92748400-92749400	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr15:92748400-92749400	Enhancers	iPS-18 Cell Line	embryonic stem cell

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