The 2.0 version of rSNPBase

Variant report

Variant rs57545244
Chromosome Location chr11:34213787-34213788
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:83 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr11:34196600-34214000 Weak transcription Stomach Mucosa stomach
2 chr11:34202400-34214600 Weak transcription Sigmoid Colon Sigmoid Colon
3 chr11:34203000-34224800 Weak transcription Primary neutrophils fromperipheralblood blood
4 chr11:34203400-34228200 Weak transcription Psoas Muscle Psoas
5 chr11:34206200-34214000 Weak transcription Rectal Smooth Muscle rectum
6 chr11:34206400-34214200 Weak transcription Ovary ovary
7 chr11:34207000-34218000 Weak transcription Primary hematopoietic stem cells short term culture blood
8 chr11:34207200-34226000 Weak transcription Gastric stomach
9 chr11:34208200-34213800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
10 chr11:34208200-34235200 Weak transcription Adipose Nuclei Adipose
11 chr11:34208400-34213800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
12 chr11:34208400-34214000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
13 chr11:34208400-34217200 Weak transcription Left Ventricle heart
14 chr11:34208600-34214000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
15 chr11:34208600-34214800 Weak transcription Right Atrium heart
16 chr11:34208800-34213800 Weak transcription Right Ventricle heart
17 chr11:34210200-34214200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
18 chr11:34210600-34213800 Weak transcription Brain Germinal Matrix brain
19 chr11:34210600-34214000 Weak transcription ES-WA7 Cell Line embryonic stem cell
20 chr11:34210600-34214000 Weak transcription H9 Cell Line embryonic stem cell
21 chr11:34210600-34214000 Weak transcription HUES6 Cell Line embryonic stem cell
22 chr11:34210600-34214000 Weak transcription A549 lung
23 chr11:34210600-34214200 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
24 chr11:34210600-34214600 Weak transcription iPS-18 Cell Line embryonic stem cell
25 chr11:34210600-34215600 Weak transcription iPS-15b Cell Line embryonic stem cell
26 chr11:34210600-34216000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
27 chr11:34210600-34224800 Weak transcription Primary T cells from cord blood blood
28 chr11:34210600-34226600 Weak transcription Pancreas Pancrea
29 chr11:34210800-34214000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
30 chr11:34210800-34214000 Weak transcription Fetal Lung lung
31 chr11:34210800-34214200 Weak transcription HUES64 Cell Line embryonic stem cell
32 chr11:34210800-34214600 Weak transcription HUES48 Cell Line embryonic stem cell
33 chr11:34211000-34214000 Weak transcription Fetal Brain Female brain
34 chr11:34211000-34214600 Weak transcription Fetal Intestine Small intestine
35 chr11:34211200-34215400 Weak transcription Fetal Adrenal Gland Adrenal Gland
36 chr11:34211200-34217000 Weak transcription Liver Liver
37 chr11:34211400-34214000 Weak transcription HepG2 liver
38 chr11:34211400-34214400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
39 chr11:34211400-34214400 Weak transcription iPS-20b Cell Line embryonic stem cell
40 chr11:34212000-34216800 Enhancers Placenta Placenta
41 chr11:34212600-34213800 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
42 chr11:34212600-34214200 Enhancers Fetal Thymus thymus
43 chr11:34213000-34214000 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
44 chr11:34213000-34214200 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
45 chr11:34213000-34214200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
46 chr11:34213000-34215200 Enhancers Brain Substantia Nigra brain
47 chr11:34213000-34216000 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
48 chr11:34213200-34213800 Enhancers H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
49 chr11:34213200-34213800 Enhancers Stomach Smooth Muscle stomach
50 chr11:34213200-34214000 Enhancers NHLF lung

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Last update: Aug 31, 2015