Variant report

Variant	rs575459644
Chromosome Location	chr6:149320702-149320703
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032690	chr6:149206106-149398712	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1032319	chr6:149271433-149550525	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv538470	chr6:149271433-149550525	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv830842	chr6:149272321-149427340	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
5	esv3473557	chr6:149320583-149321059	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3473559	chr6:149320657-149321020	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3473556	chr6:149320663-149320980	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149292800-149321200	Weak transcription	Aorta	Aorta
2	chr6:149305400-149381400	Weak transcription	Gastric	stomach
3	chr6:149310200-149335200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:149311000-149321000	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr6:149311000-149321200	Weak transcription	Pancreas	Pancrea
6	chr6:149311000-149335200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr6:149312600-149321000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr6:149314400-149321200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr6:149314800-149327400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr6:149315000-149320800	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr6:149315000-149322200	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr6:149317000-149321800	Enhancers	Muscle Satellite Cultured Cells	--
13	chr6:149317200-149320800	Weak transcription	Fetal Stomach	stomach
14	chr6:149317200-149321200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr6:149317200-149321200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr6:149317200-149321200	Weak transcription	Esophagus	oesophagus
17	chr6:149317200-149321400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr6:149317200-149321800	Enhancers	Osteobl	bone
19	chr6:149317600-149321600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr6:149317600-149321800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr6:149317600-149321800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr6:149317600-149322000	Enhancers	HSMM	muscle
23	chr6:149317800-149322200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr6:149318000-149320800	Weak transcription	Primary B cells from cord blood	blood
25	chr6:149318400-149322400	Enhancers	Dnd41	blood
26	chr6:149319000-149320800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr6:149319000-149321800	Enhancers	Primary hematopoietic stem cells short term culture	blood
28	chr6:149319000-149321800	Enhancers	Ovary	ovary
29	chr6:149319000-149321800	Enhancers	NH-A	brain
30	chr6:149319200-149321600	Enhancers	Adipose Nuclei	Adipose
31	chr6:149319400-149321800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
32	chr6:149319400-149321800	Enhancers	Skeletal Muscle Male	skeletal muscle
33	chr6:149319400-149321800	Enhancers	HSMMtube	muscle
34	chr6:149319600-149321400	Enhancers	Brain Hippocampus Middle	brain
35	chr6:149319600-149321400	Enhancers	Sigmoid Colon	Sigmoid Colon
36	chr6:149319600-149321800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr6:149319800-149321600	Enhancers	HMEC	breast
38	chr6:149319800-149321800	Enhancers	Primary monocytes fromperipheralblood	blood
39	chr6:149320000-149320800	Weak transcription	Right Atrium	heart
40	chr6:149320000-149321000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr6:149320000-149321400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr6:149320000-149321600	Enhancers	Psoas Muscle	Psoas
43	chr6:149320000-149321600	Enhancers	Hela-S3	cervix
44	chr6:149320000-149321800	Enhancers	Skeletal Muscle Female	skeletal muscle
45	chr6:149320000-149321800	Enhancers	Stomach Smooth Muscle	stomach
46	chr6:149320000-149321800	Enhancers	Monocytes-CD14+_RO01746	blood
47	chr6:149320200-149321200	Weak transcription	Spleen	Spleen
48	chr6:149320200-149321600	Enhancers	NHLF	lung
49	chr6:149320200-149322200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr6:149320200-149322400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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