Variant report

Variant	rs575509254
Chromosome Location	chr6:69690247-69690248
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5338	chr6:69670701-69701360	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv603620	chr6:69684850-69691596	Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv3522682	chr6:69686981-69692879	Weak transcription Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3522683	chr6:69686981-69692879	Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv18272	chr6:69687686-69691720	Weak transcription Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv499697	chr6:69687694-69691833	Weak transcription Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv2421691	chr6:69687698-69691368	Weak transcription Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv517304	chr6:69688165-69690567	Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv603622	chr6:69688165-69691074	Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv603623	chr6:69688165-69691303	Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv603624	chr6:69688165-69691596	Strong transcription Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv603625	chr6:69688476-69691303	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv603626	chr6:69688476-69691596	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv603627	chr6:69688650-69691596	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv603628	chr6:69688950-69691303	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv603629	chr6:69689190-69691303	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv603630	chr6:69689190-69691596	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
19	nsv603631	chr6:69689297-69691303	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69685000-69700000	Weak transcription	Brain Angular Gyrus	brain
2	chr6:69685400-69700400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr6:69685800-69758800	Weak transcription	Fetal Brain Male	brain
4	chr6:69686000-69695400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr6:69686000-69700000	Weak transcription	Brain Hippocampus Middle	brain
6	chr6:69686000-69700400	Weak transcription	Brain Anterior Caudate	brain
7	chr6:69686000-69700600	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr6:69686200-69695200	Weak transcription	Brain Cingulate Gyrus	brain
9	chr6:69686200-69703400	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr6:69686600-69700200	Weak transcription	Brain Substantia Nigra	brain
11	chr6:69686800-69706200	Weak transcription	Fetal Lung	lung
12	chr6:69687800-69700400	Weak transcription	Brain Germinal Matrix	brain
13	chr6:69688200-69721200	Weak transcription	Left Ventricle	heart
14	chr6:69688400-69693800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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