Variant report

Variant	rs57552119
Chromosome Location	chr3:134384722-134384723
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:134370814..134375265-chr3:134381984..134385819,4	MCF-7	breast:
2	chr3:134378728..134380382-chr3:134383107..134386104,2	K562	blood:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs55987486	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877510	chr3:134126150-134400448	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134371000-134386800	Weak transcription	Pancreas	Pancrea
2	chr3:134380800-134385200	Enhancers	Fetal Muscle Trunk	muscle
3	chr3:134380800-134386600	Enhancers	Fetal Muscle Leg	muscle
4	chr3:134381600-134386200	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr3:134381600-134388400	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr3:134382400-134384800	Enhancers	Fetal Heart	heart
7	chr3:134382600-134385600	Enhancers	Right Ventricle	heart
8	chr3:134383000-134385200	Weak transcription	Psoas Muscle	Psoas
9	chr3:134383000-134386200	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr3:134383400-134385200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr3:134383400-134385200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr3:134383400-134385200	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr3:134383400-134385200	Weak transcription	NH-A	brain
14	chr3:134383400-134385200	Weak transcription	NHDF-Ad	bronchial
15	chr3:134383400-134385400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr3:134383600-134384800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr3:134383600-134384800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr3:134383600-134385000	Weak transcription	HSMM	muscle
19	chr3:134383600-134385000	Weak transcription	Osteobl	bone
20	chr3:134383600-134385200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr3:134383600-134385200	Weak transcription	HMEC	breast
22	chr3:134383800-134385000	Weak transcription	NHEK	skin
23	chr3:134384000-134385000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr3:134384000-134385200	Enhancers	Fetal Brain Male	brain
25	chr3:134384200-134384800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr3:134384200-134384800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr3:134384200-134385200	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr3:134384400-134385200	Weak transcription	Left Ventricle	heart
29	chr3:134384400-134392200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr3:134384600-134385000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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