Variant report

Variant	rs57553479
Chromosome Location	chr15:41921660-41921661
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:41911067..41913246-chr15:41921472..41923758,2	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs13380105	1.00[AMR][1000 genomes]
rs60748295	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052902	chr15:41869277-41951572	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41913800-41939400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr15:41914200-41924600	Weak transcription	Colon Smooth Muscle	Colon
3	chr15:41914200-41935800	Weak transcription	Gastric	stomach
4	chr15:41914400-41925800	Weak transcription	Lung	lung
5	chr15:41914600-41922800	Weak transcription	Duodenum Mucosa	Duodenum
6	chr15:41914600-41924400	Weak transcription	Ovary	ovary
7	chr15:41914600-41924600	Weak transcription	Left Ventricle	heart
8	chr15:41915000-41922000	Weak transcription	Brain Cingulate Gyrus	brain
9	chr15:41915000-41924200	Weak transcription	Brain Anterior Caudate	brain
10	chr15:41915000-41924600	Weak transcription	Right Atrium	heart
11	chr15:41915000-41926000	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr15:41915000-41927400	Weak transcription	Fetal Muscle Leg	muscle
13	chr15:41915200-41922200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr15:41915200-41924400	Weak transcription	Brain Substantia Nigra	brain
15	chr15:41917400-41922400	Weak transcription	Fetal Intestine Small	intestine
16	chr15:41917800-41926200	Weak transcription	Hela-S3	cervix
17	chr15:41921000-41921800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr15:41921200-41922600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr15:41921400-41921800	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr15:41921400-41921800	Enhancers	HSMMtube	muscle
21	chr15:41921400-41922000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr15:41921400-41922200	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr15:41921400-41922200	Enhancers	HUES48 Cell Line	embryonic stem cell
24	chr15:41921400-41922400	Enhancers	Muscle Satellite Cultured Cells	--
25	chr15:41921400-41922400	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr15:41921400-41922600	Enhancers	H9 Cell Line	embryonic stem cell
27	chr15:41921400-41922600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr15:41921400-41922800	Enhancers	HUES64 Cell Line	embryonic stem cell
29	chr15:41921400-41923200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr15:41921400-41923200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr15:41921400-41923200	Enhancers	HUES6 Cell Line	embryonic stem cell
32	chr15:41921400-41923200	Enhancers	iPS-15b Cell Line	embryonic stem cell
33	chr15:41921600-41922000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr15:41921600-41922000	Enhancers	Skeletal Muscle Male	skeletal muscle
35	chr15:41921600-41922400	Enhancers	Psoas Muscle	Psoas
36	chr15:41921600-41922400	Enhancers	NHDF-Ad	bronchial
37	chr15:41921600-41922600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr15:41921600-41922800	Enhancers	H1 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links