Variant report

Variant	rs575538920
Chromosome Location	chr9:78912943-78912944
allele	-/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869152	chr9:78742197-79583399	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv931033	chr9:78850330-79366454	Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv508552	chr9:78864913-78956326	Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv893477	chr9:78892526-78932928	Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
5	esv1010025	chr9:78912186-78922397	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:78883000-78917200	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr9:78903400-78917600	Weak transcription	Stomach Mucosa	stomach
3	chr9:78905800-78922400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr9:78911400-78913000	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr9:78911400-78913000	Enhancers	HSMM	muscle
6	chr9:78911600-78913400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr9:78911600-78913800	Genic enhancers	Fetal Intestine Small	intestine
8	chr9:78911800-78913000	Flanking Active TSS	HSMMtube	muscle
9	chr9:78912000-78913000	Enhancers	Fetal Thymus	thymus
10	chr9:78912000-78913600	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr9:78912000-78916000	Strong transcription	Duodenum Mucosa	Duodenum
12	chr9:78912000-78917600	Strong transcription	Fetal Intestine Large	intestine
13	chr9:78912200-78913000	Flanking Active TSS	Fetal Kidney	kidney
14	chr9:78912200-78913000	Flanking Active TSS	Fetal Muscle Trunk	muscle
15	chr9:78912200-78913200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr9:78912200-78913200	Enhancers	Primary hematopoietic stem cells	blood
17	chr9:78912200-78913200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr9:78912200-78913200	Enhancers	Placenta	Placenta
19	chr9:78912200-78913400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr9:78912200-78913400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr9:78912200-78913400	Enhancers	Placenta Amnion	Placenta Amnion
22	chr9:78912200-78913800	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr9:78912200-78913800	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr9:78912400-78913000	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
25	chr9:78912400-78913000	Active TSS	Colon Smooth Muscle	Colon
26	chr9:78912400-78913000	Flanking Active TSS	Fetal Stomach	stomach
27	chr9:78912400-78913200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr9:78912400-78913200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr9:78912400-78913200	Flanking Active TSS	Fetal Muscle Leg	muscle
30	chr9:78912400-78913400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr9:78912400-78913400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr9:78912400-78913400	Flanking Active TSS	Adipose Nuclei	Adipose
33	chr9:78912400-78913400	Flanking Active TSS	NHDF-Ad	bronchial
34	chr9:78912400-78913800	Enhancers	HUES64 Cell Line	embryonic stem cell
35	chr9:78912400-78927800	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr9:78912600-78913000	Enhancers	Primary monocytes fromperipheralblood	blood
37	chr9:78912600-78913000	Enhancers	Primary neutrophils fromperipheralblood	blood
38	chr9:78912600-78913000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
39	chr9:78912600-78913000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr9:78912600-78913000	Active TSS	Aorta	Aorta
41	chr9:78912600-78913000	Active TSS	Ovary	ovary
42	chr9:78912600-78913200	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
43	chr9:78912600-78913200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr9:78912600-78913200	Flanking Active TSS	Fetal Lung	lung
45	chr9:78912600-78913400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr9:78912600-78913800	Enhancers	H1 Cell Line	embryonic stem cell
47	chr9:78912800-78913000	Active TSS	Stomach Smooth Muscle	stomach
48	chr9:78912800-78913000	Active TSS	NHLF	lung
49	chr9:78912800-78913000	Bivalent/Poised TSS	Osteobl	bone
50	chr9:78912800-78913200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin

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