Variant report

Variant	rs57556323
Chromosome Location	chr15:93586015-93586016
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs73458330	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948738	chr15:93070742-93728147	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
2	nsv1049490	chr15:93134405-93591660	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	151 gene(s)	inside rSNPs	diseases
3	nsv530846	chr15:93323949-94030462	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	153 gene(s)	inside rSNPs	diseases
4	nsv948881	chr15:93383740-93603608	Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
5	nsv917347	chr15:93444094-93586814	Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	39 gene(s)	inside rSNPs	diseases
6	nsv1041668	chr15:93558188-93611598	Bivalent Enhancer Strong transcription Genic enhancers Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
7	esv1835897	chr15:93568884-93589740	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
8	nsv1052724	chr15:93569701-93622666	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
9	nsv526532	chr15:93570723-93597006	Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
10	nsv904501	chr15:93570723-93600158	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
11	nsv904502	chr15:93570723-93600976	Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
12	nsv525266	chr15:93570723-93602056	Weak transcription Strong transcription Enhancers Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
13	nsv904503	chr15:93570723-93605090	Enhancers Strong transcription ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
14	nsv523617	chr15:93570723-93610139	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
15	nsv1043084	chr15:93572133-93598434	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
16	nsv542471	chr15:93572133-93598434	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS	Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
17	esv1815629	chr15:93572782-93596165	Strong transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
18	nsv1045427	chr15:93576982-93598440	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
19	nsv1054502	chr15:93580672-93611598	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
20	nsv542472	chr15:93580672-93611598	Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
21	nsv833096	chr15:93584742-93766257	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93570400-93586400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:93574400-93586200	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr15:93574400-93587000	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr15:93574400-93587600	Weak transcription	Left Ventricle	heart
5	chr15:93574800-93599800	Weak transcription	Psoas Muscle	Psoas
6	chr15:93579800-93588000	Weak transcription	Thymus	Thymus
7	chr15:93580000-93587200	Weak transcription	Pancreas	Pancrea
8	chr15:93580400-93587600	Weak transcription	Spleen	Spleen
9	chr15:93580600-93587800	Weak transcription	Fetal Intestine Large	intestine
10	chr15:93581000-93586200	Weak transcription	Ovary	ovary
11	chr15:93581000-93587600	Weak transcription	Gastric	stomach
12	chr15:93581000-93588600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr15:93581200-93586200	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr15:93581400-93587200	Weak transcription	Fetal Lung	lung
15	chr15:93581400-93588000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr15:93581400-93588400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr15:93581400-93588400	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr15:93581400-93589800	Weak transcription	Brain Substantia Nigra	brain
19	chr15:93581400-93591800	Weak transcription	Brain Angular Gyrus	brain
20	chr15:93581600-93586200	Weak transcription	Brain Anterior Caudate	brain
21	chr15:93581600-93587000	Weak transcription	Rectal Smooth Muscle	rectum
22	chr15:93581600-93587400	Weak transcription	Right Ventricle	heart
23	chr15:93581600-93587600	Weak transcription	Brain Cingulate Gyrus	brain
24	chr15:93581600-93587800	Weak transcription	Brain Hippocampus Middle	brain
25	chr15:93581600-93588000	Weak transcription	Colonic Mucosa	Colon
26	chr15:93581600-93603600	Weak transcription	Right Atrium	heart
27	chr15:93582400-93587600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr15:93583000-93589400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr15:93583200-93587800	Enhancers	Primary hematopoietic stem cells	blood
30	chr15:93583800-93587000	Strong transcription	Cortex derived primary cultured neurospheres	brain
31	chr15:93583800-93587000	Strong transcription	Fetal Stomach	stomach
32	chr15:93584000-93586200	Weak transcription	Adipose Nuclei	Adipose
33	chr15:93584000-93587400	Weak transcription	Fetal Intestine Small	intestine
34	chr15:93584400-93587600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr15:93584400-93589600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr15:93584600-93587400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
37	chr15:93584800-93586200	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr15:93584800-93586400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr15:93585000-93588400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
40	chr15:93585400-93588200	Genic enhancers	Stomach Smooth Muscle	stomach
41	chr15:93585600-93586200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr15:93585600-93586200	Genic enhancers	Esophagus	oesophagus
43	chr15:93585600-93587000	Strong transcription	Brain Germinal Matrix	brain
44	chr15:93585600-93587200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr15:93585600-93589400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr15:93585600-93596600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
47	chr15:93585800-93586400	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr15:93585800-93587000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr15:93585800-93587000	Weak transcription	Primary monocytes fromperipheralblood	blood
50	chr15:93585800-93589400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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