Variant report

Variant	rs57559259
Chromosome Location	chr6:143003779-143003780
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12191635	0.97[EUR][1000 genomes]
rs12195495	0.92[EUR][1000 genomes]
rs17071952	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35024907	0.94[EUR][1000 genomes]
rs61290118	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949088	chr6:142561402-143128849	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv830827	chr6:142840734-143015005	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv830828	chr6:142970134-143116517	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:142998200-143008200	Weak transcription	Fetal Stomach	stomach
2	chr6:142999200-143006000	Weak transcription	Fetal Lung	lung
3	chr6:142999400-143007800	Enhancers	Fetal Brain Male	brain
4	chr6:143001600-143004200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:143001800-143013600	Weak transcription	NH-A	brain
6	chr6:143002000-143004000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:143002000-143004000	Weak transcription	NHEK	skin
8	chr6:143002000-143004800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:143002000-143004800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr6:143002000-143006200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:143002400-143006000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr6:143002400-143006400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr6:143002400-143007000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr6:143002600-143005200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr6:143002600-143006000	Weak transcription	Primary T helper cells fromperipheralblood	blood
16	chr6:143002600-143013800	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr6:143002800-143005000	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr6:143003400-143004400	Weak transcription	Primary T cells from cord blood	blood
19	chr6:143003600-143003800	Enhancers	Esophagus	oesophagus
20	chr6:143003600-143004000	Weak transcription	Fetal Brain Female	brain
21	chr6:143003600-143006800	Enhancers	Breast Myoepithelial Primary Cells	Breast

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