Variant report

Variant	rs57562174
Chromosome Location	chr7:39793889-39793890
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11971465	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35693404	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59642583	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427777	chr7:39726513-39936904	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv887973	chr7:39772654-40110720	Strong transcription Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39774200-39807400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr7:39774400-39794000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr7:39774400-39797600	Weak transcription	Thymus	Thymus
4	chr7:39775800-39796400	Weak transcription	Primary hematopoietic stem cells	blood
5	chr7:39775800-39807000	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr7:39775800-39811200	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr7:39776200-39794000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr7:39776600-39820400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr7:39782400-39809000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr7:39784800-39802600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr7:39785000-39831800	Weak transcription	Primary B cells from cord blood	blood
12	chr7:39787200-39794000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr7:39787800-39794000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr7:39789200-39794000	Weak transcription	HUVEC	blood vessel
15	chr7:39789400-39794000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr7:39789400-39794000	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr7:39789400-39794000	Weak transcription	HSMMtube	muscle
18	chr7:39789400-39794200	Weak transcription	Aorta	Aorta
19	chr7:39789600-39807200	Weak transcription	Primary B cells from peripheral blood	blood
20	chr7:39789800-39794200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr7:39790000-39794000	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr7:39790000-39794000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr7:39790200-39794000	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr7:39790400-39794200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr7:39791000-39794200	Weak transcription	Fetal Kidney	kidney
26	chr7:39791200-39794000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr7:39791400-39794200	Weak transcription	HepG2	liver
28	chr7:39793000-39794000	Weak transcription	Fetal Intestine Small	intestine
29	chr7:39793200-39794000	Weak transcription	Stomach Smooth Muscle	stomach
30	chr7:39793400-39794000	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr7:39793400-39794000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr7:39793400-39794000	Enhancers	NHDF-Ad	bronchial
33	chr7:39793400-39794200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr7:39793400-39794200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr7:39793400-39794200	Enhancers	Esophagus	oesophagus
36	chr7:39793400-39794200	Enhancers	Fetal Muscle Trunk	muscle
37	chr7:39793400-39794200	Enhancers	Ovary	ovary
38	chr7:39793400-39794600	Enhancers	ES-I3 Cell Line	embryonic stem cell
39	chr7:39793400-39794600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
40	chr7:39793400-39794600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr7:39793400-39794600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr7:39793400-39794600	Enhancers	Fetal Muscle Leg	muscle
43	chr7:39793400-39795200	Enhancers	Fetal Lung	lung
44	chr7:39793400-39799800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr7:39793400-39802000	Enhancers	Breast Myoepithelial Primary Cells	Breast
46	chr7:39793600-39794000	Enhancers	Lung	lung
47	chr7:39793600-39794000	Enhancers	Pancreas	Pancrea
48	chr7:39793800-39794000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr7:39793800-39794000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr7:39793800-39794000	Active TSS	NHLF	lung

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