Variant report

Variant	rs575641667
Chromosome Location	chr6:5524878-5524879
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019428	chr6:5216835-5627839	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv538118	chr6:5216835-5627839	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1034607	chr6:5311590-5573514	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv538120	chr6:5311590-5573514	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv916361	chr6:5315853-5695486	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1023027	chr6:5377308-5556749	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv538121	chr6:5377308-5556749	Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv1017506	chr6:5443538-5551125	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv883420	chr6:5524393-5584422	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:5500400-5525000	Weak transcription	Spleen	Spleen
2	chr6:5501000-5550600	Weak transcription	Pancreas	Pancrea
3	chr6:5508000-5547400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr6:5509600-5527400	Weak transcription	Lung	lung
5	chr6:5511200-5546400	Weak transcription	Fetal Intestine Small	intestine
6	chr6:5511400-5540200	Weak transcription	Esophagus	oesophagus
7	chr6:5511400-5568200	Weak transcription	Aorta	Aorta
8	chr6:5512600-5525200	Weak transcription	HSMMtube	muscle
9	chr6:5514000-5537400	Weak transcription	Left Ventricle	heart
10	chr6:5516200-5525800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr6:5518600-5550000	Weak transcription	Right Ventricle	heart
12	chr6:5521400-5525600	Weak transcription	HMEC	breast
13	chr6:5521800-5525200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr6:5522600-5531400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr6:5522600-5544600	Weak transcription	Ovary	ovary
16	chr6:5522600-5548000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr6:5522800-5550400	Weak transcription	GM12878-XiMat	blood
18	chr6:5523000-5549000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr6:5523400-5531200	Weak transcription	Primary T cells from cord blood	blood
20	chr6:5523600-5531400	Weak transcription	Fetal Thymus	thymus
21	chr6:5524400-5525200	Strong transcription	Primary B cells from cord blood	blood
22	chr6:5524400-5526000	Enhancers	Fetal Heart	heart
23	chr6:5524600-5525800	Enhancers	Primary monocytes fromperipheralblood	blood
24	chr6:5524600-5525800	Enhancers	Brain Substantia Nigra	brain
25	chr6:5524800-5525000	Enhancers	Brain Inferior Temporal Lobe	brain
26	chr6:5524800-5525200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr6:5524800-5525400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr6:5524800-5525400	Enhancers	Brain Hippocampus Middle	brain
29	chr6:5524800-5525800	Enhancers	Brain Anterior Caudate	brain
30	chr6:5524800-5526200	Enhancers	Monocytes-CD14+_RO01746	blood
31	chr6:5524800-5526400	Enhancers	NHDF-Ad	bronchial

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