Variant report

Variant	rs575645004
Chromosome Location	chr7:136936403-136936404
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:136930142..136933282-chr7:136935160..136937647,3	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029192	chr7:136433278-137147566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831149	chr7:136831665-137006468	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv889238	chr7:136915059-136989606	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv889239	chr7:136923730-136994013	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv3476825	chr7:136936180-136937799	Strong transcription Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3476823	chr7:136936219-136937765	Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3476824	chr7:136936222-136937781	Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3495275	chr7:136936246-136937754	Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3495274	chr7:136936249-136937718	Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv3495277	chr7:136936277-136937718	Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv3495276	chr7:136936277-136937723	Strong transcription Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv3476826	chr7:136936339-136937662	Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv20618	chr7:136936404-136937641	Strong transcription Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136909800-136943000	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr7:136913400-136937200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr7:136920200-136939000	Weak transcription	Fetal Kidney	kidney
4	chr7:136923200-136939600	Weak transcription	Brain Angular Gyrus	brain
5	chr7:136923200-136940200	Weak transcription	Brain Substantia Nigra	brain
6	chr7:136923600-136937800	Weak transcription	Brain Germinal Matrix	brain
7	chr7:136923800-136937600	Weak transcription	Brain Cingulate Gyrus	brain
8	chr7:136924000-136936800	Weak transcription	Brain Hippocampus Middle	brain
9	chr7:136924000-136939800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr7:136924000-136939800	Weak transcription	Fetal Intestine Small	intestine
11	chr7:136924400-136939200	Weak transcription	Aorta	Aorta
12	chr7:136924600-136941400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr7:136926600-136943400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr7:136927000-136942600	Weak transcription	Fetal Brain Male	brain
15	chr7:136927200-136950000	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr7:136927400-136939200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr7:136927400-136944000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr7:136928600-136940000	Strong transcription	Cortex derived primary cultured neurospheres	brain
19	chr7:136929600-136943000	Weak transcription	Liver	Liver
20	chr7:136931200-136939200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
21	chr7:136931600-136943000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr7:136932600-136938600	Weak transcription	Stomach Smooth Muscle	stomach
23	chr7:136933400-136938200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr7:136933800-136938000	Strong transcription	Brain Anterior Caudate	brain
25	chr7:136934200-136939600	Weak transcription	Fetal Brain Female	brain
26	chr7:136934600-136938000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
27	chr7:136934800-136937200	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr7:136935400-136940600	Weak transcription	Fetal Muscle Trunk	muscle
29	chr7:136935600-136938400	Strong transcription	Placenta	Placenta
30	chr7:136935800-136936800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr7:136935800-136943000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr7:136936200-136937600	Weak transcription	Fetal Stomach	stomach
33	chr7:136936200-136939800	Weak transcription	Fetal Muscle Leg	muscle
34	chr7:136936400-136937200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links