Variant report

Variant	rs575660
Chromosome Location	chr9:14097618-14097619
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:14081509..14084690-chr9:14096320..14100204,3	MCF-7	breast:
2	chr9:14079254..14081862-chr9:14096417..14098493,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1743544	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs542733	0.95[CEU][hapmap];0.95[GIH][hapmap];0.83[MEX][hapmap];0.88[TSI][hapmap];0.91[EUR][1000 genomes]
rs766401	0.92[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033764	chr9:13764918-14226168	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv892593	chr9:13948798-14233159	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1023303	chr9:14025605-14286269	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv540069	chr9:14025605-14286269	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv1029491	chr9:14033607-14942373	Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
6	nsv429998	chr9:14043516-14214688	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:14075400-14116000	Weak transcription	Gastric	stomach
2	chr9:14078000-14112800	Weak transcription	Duodenum Mucosa	Duodenum
3	chr9:14081400-14115800	Weak transcription	Hela-S3	cervix
4	chr9:14084800-14098600	Weak transcription	Pancreas	Pancrea
5	chr9:14086000-14115600	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr9:14090600-14115200	Weak transcription	Brain Cingulate Gyrus	brain
7	chr9:14095200-14097800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr9:14095400-14099000	Enhancers	HSMM	muscle
9	chr9:14095400-14099200	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr9:14095800-14098800	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr9:14095800-14098800	Flanking Active TSS	HUVEC	blood vessel
12	chr9:14095800-14099200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr9:14096000-14098600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr9:14096000-14098800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr9:14096000-14099200	Active TSS	Aorta	Aorta
16	chr9:14096200-14098800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
17	chr9:14096600-14098600	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr9:14096600-14098600	Weak transcription	NHDF-Ad	bronchial
19	chr9:14096600-14098800	Enhancers	Fetal Intestine Small	intestine
20	chr9:14096600-14099200	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr9:14096600-14099200	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr9:14096600-14099200	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr9:14096600-14099400	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr9:14096600-14099600	Weak transcription	Right Ventricle	heart
25	chr9:14096800-14097800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr9:14096800-14097800	Weak transcription	Brain Hippocampus Middle	brain
27	chr9:14096800-14098200	Enhancers	iPS-20b Cell Line	embryonic stem cell
28	chr9:14096800-14098600	Weak transcription	Psoas Muscle	Psoas
29	chr9:14096800-14098800	Enhancers	Breast Myoepithelial Primary Cells	Breast
30	chr9:14096800-14098800	Enhancers	Rectal Smooth Muscle	rectum
31	chr9:14096800-14099200	Enhancers	Fetal Brain Female	brain
32	chr9:14096800-14099200	Flanking Active TSS	A549	lung
33	chr9:14096800-14099400	Enhancers	Adipose Nuclei	Adipose
34	chr9:14096800-14099400	Enhancers	Colon Smooth Muscle	Colon
35	chr9:14096800-14099600	Enhancers	Cortex derived primary cultured neurospheres	brain
36	chr9:14096800-14099800	Weak transcription	Fetal Muscle Trunk	muscle
37	chr9:14096800-14120000	Weak transcription	Brain Substantia Nigra	brain
38	chr9:14097000-14097800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr9:14097000-14097800	Weak transcription	Liver	Liver
40	chr9:14097000-14097800	Enhancers	HMEC	breast
41	chr9:14097000-14098000	Enhancers	NHLF	lung
42	chr9:14097000-14098200	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr9:14097000-14098400	Enhancers	Fetal Heart	heart
44	chr9:14097000-14098400	Weak transcription	Ovary	ovary
45	chr9:14097000-14098400	Enhancers	NHEK	skin
46	chr9:14097000-14099000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr9:14097200-14097800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr9:14097200-14097800	Flanking Active TSS	Fetal Lung	lung
49	chr9:14097200-14098000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr9:14097200-14098800	Enhancers	Brain Anterior Caudate	brain

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