Variant report

Variant	rs575687840
Chromosome Location	chr3:70093618-70093619
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533396	chr3:69964029-70538306	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	esv3375671	chr3:70093362-70095360	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
3	esv3403259	chr3:70093612-70094860	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:70063800-70098000	Weak transcription	Aorta	Aorta
2	chr3:70091000-70093800	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr3:70092000-70105000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr3:70092400-70093800	Enhancers	Brain Germinal Matrix	brain
5	chr3:70092800-70093800	Enhancers	Brain Hippocampus Middle	brain
6	chr3:70093200-70093800	Enhancers	Brain Angular Gyrus	brain
7	chr3:70093600-70093800	Enhancers	Brain Anterior Caudate	brain
8	chr3:70093600-70098800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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