Variant report

Variant	rs575690189
Chromosome Location	chr6:79691983-79691984
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015352	chr6:79521820-79757024	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv830705	chr6:79659297-79829530	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv604051	chr6:79691175-79728328	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:79648800-79714400	Weak transcription	Gastric	stomach
2	chr6:79649000-79715200	Weak transcription	Stomach Mucosa	stomach
3	chr6:79658600-79695000	Weak transcription	Pancreas	Pancrea
4	chr6:79659200-79702800	Weak transcription	Psoas Muscle	Psoas
5	chr6:79659400-79702400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr6:79659400-79707000	Weak transcription	Esophagus	oesophagus
7	chr6:79659600-79704000	Weak transcription	Lung	lung
8	chr6:79659600-79707000	Weak transcription	Spleen	Spleen
9	chr6:79659800-79702600	Weak transcription	Right Ventricle	heart
10	chr6:79659800-79703400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr6:79659800-79704000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr6:79659800-79707000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr6:79664200-79695000	Weak transcription	Fetal Stomach	stomach
14	chr6:79664200-79698000	Weak transcription	Fetal Intestine Small	intestine
15	chr6:79664200-79702400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr6:79669800-79707000	Weak transcription	Aorta	Aorta
17	chr6:79671600-79693200	Weak transcription	Thymus	Thymus
18	chr6:79672800-79702600	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr6:79675200-79693200	Weak transcription	Colonic Mucosa	Colon
20	chr6:79675200-79702200	Weak transcription	Brain Angular Gyrus	brain
21	chr6:79675200-79704600	Weak transcription	Small Intestine	intestine
22	chr6:79675400-79695000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr6:79675800-79706800	Weak transcription	NHEK	skin
24	chr6:79676000-79694000	Weak transcription	HSMMtube	muscle
25	chr6:79676000-79703600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr6:79679000-79692000	Weak transcription	A549	lung
27	chr6:79679200-79698800	Weak transcription	Brain Substantia Nigra	brain
28	chr6:79679800-79702600	Weak transcription	Brain Cingulate Gyrus	brain
29	chr6:79680000-79702200	Weak transcription	Stomach Smooth Muscle	stomach
30	chr6:79687000-79692200	Strong transcription	Primary T killer memory cells from peripheral blood	blood
31	chr6:79687000-79695200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr6:79687000-79698800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr6:79687000-79709400	Strong transcription	Duodenum Mucosa	Duodenum
34	chr6:79687000-79714400	Strong transcription	Liver	Liver
35	chr6:79687000-79715800	Strong transcription	Primary T cells fromperipheralblood	blood
36	chr6:79687000-79715800	Strong transcription	Primary T helper cells fromperipheralblood	blood
37	chr6:79687000-79736000	Strong transcription	HUES6 Cell Line	embryonic stem cell
38	chr6:79687000-79736200	Strong transcription	Primary monocytes fromperipheralblood	blood
39	chr6:79687200-79692200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr6:79687200-79692200	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
41	chr6:79687200-79692200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr6:79687200-79692200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr6:79687200-79692200	Strong transcription	HSMM	muscle
44	chr6:79687200-79695000	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
45	chr6:79687200-79696400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr6:79687200-79697400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr6:79687200-79698000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr6:79687200-79698200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr6:79687200-79698600	Strong transcription	HepG2	liver
50	chr6:79687200-79699200	Strong transcription	Placenta	Placenta

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