Variant report

Variant	rs57570563
Chromosome Location	chr15:74989267-74989268
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:12)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:12 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	HCFC1	chr15:74987235-74989522	Hela-S3	cervix:	n/a	n/a
2	TBP	chr15:74988253-74989303	Hela-S3	cervix:	n/a	n/a
3	E2F4	chr15:74987625-74989901	MCF10A-Er-Src	breast:	n/a	n/a
4	MXI1	chr15:74987650-74989303	SK-N-SH	brain:	n/a	n/a
5	NR3C1	chr15:74989210-74989322	A549	lung:	n/a	n/a
6	CEBPB	chr15:74989174-74989539	HepG2	liver:	n/a	n/a
7	POLR2A	chr15:74988937-74989411	ECC-1	luminal epithelium:	n/a	n/a
8	POLR2A	chr15:74988089-74989336	Raji	blood:	n/a	n/a
9	MXI1	chr15:74987263-74989293	IMR90	lung:	n/a	n/a
10	POLR2A	chr15:74989257-74989395	K562	blood:	n/a	n/a
11	FOXA2	chr15:74989216-74989481	HepG2	liver:	n/a	n/a
12	POLR2A	chr15:74989129-74989329	HepG2	liver:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:74988755..74989332-chrX:101853950..101854574,2	Hela-S3	cervix:
2	chr15:74907146..74910030-chr15:74987199..74990600,3	MCF-7	breast:
3	chr15:74988643..74991141-chr15:75001608..75004455,2	K562	blood:
4	chr15:74988421..74989291-chr16:31191080..31191723,2	Hela-S3	cervix:
5	chr15:74988288..74990050-chr15:75039885..75041972,2	K562	blood:

No data

Variant related genes	Relation type
EDC3	TF binding region
ENSG00000179335	Chromatin interaction
ENSG00000271147	Chromatin interaction
ENSG00000260919	Chromatin interaction
ENSG00000089280	Chromatin interaction
ENSG00000125962	Chromatin interaction
ENSG00000140505	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs9888684	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904379	chr15:74869438-75027880	Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
2	nsv904380	chr15:74869438-75142761	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
3	nsv817698	chr15:74889163-75019449	Genic enhancers Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
4	nsv833055	chr15:74988344-75166288	Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74987400-74989400	Active TSS	A549	lung
2	chr15:74987800-74989400	Active TSS	NHDF-Ad	bronchial
3	chr15:74987800-74989600	Active TSS	Fetal Kidney	kidney
4	chr15:74988600-74989400	Flanking Active TSS	Primary hematopoietic stem cells	blood
5	chr15:74988600-74989400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
6	chr15:74988600-74989400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
7	chr15:74988600-74989400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr15:74988600-74989400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
9	chr15:74988600-74989400	Flanking Active TSS	Stomach Smooth Muscle	stomach
10	chr15:74988600-74989400	Flanking Active TSS	Dnd41	blood
11	chr15:74988600-74989600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr15:74988800-74989400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr15:74988800-74989400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
14	chr15:74988800-74989400	Flanking Active TSS	Hela-S3	cervix
15	chr15:74989000-74989400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr15:74989000-74989400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
17	chr15:74989000-74989400	Enhancers	Liver	Liver
18	chr15:74989000-74989400	Enhancers	Fetal Heart	heart
19	chr15:74989000-74989400	Flanking Active TSS	HepG2	liver
20	chr15:74989200-74989400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr15:74989200-74989400	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr15:74989200-74989400	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr15:74989200-74989400	Bivalent/Poised TSS	Primary neutrophils fromperipheralblood	blood
24	chr15:74989200-74989400	Enhancers	Primary B cells from cord blood	blood
25	chr15:74989200-74989400	Enhancers	Primary B cells from peripheral blood	blood
26	chr15:74989200-74989400	Enhancers	Primary T helper cells PMA-I stimulated	--
27	chr15:74989200-74989400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr15:74989200-74989400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
29	chr15:74989200-74989400	Enhancers	Primary T killer memory cells from peripheral blood	blood
30	chr15:74989200-74989400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr15:74989200-74989400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr15:74989200-74989400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr15:74989200-74989400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr15:74989200-74989400	Enhancers	Brain Angular Gyrus	brain
35	chr15:74989200-74989400	Active TSS	Brain Inferior Temporal Lobe	brain
36	chr15:74989200-74989400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
37	chr15:74989200-74989400	Enhancers	Colon Smooth Muscle	Colon
38	chr15:74989200-74989400	Enhancers	Duodenum Smooth Muscle	Duodenum
39	chr15:74989200-74989400	Enhancers	Fetal Stomach	stomach
40	chr15:74989200-74989400	Enhancers	Skeletal Muscle Female	skeletal muscle
41	chr15:74989200-74989400	Active TSS	GM12878-XiMat	blood
42	chr15:74989200-74989400	Enhancers	HMEC	breast
43	chr15:74989200-74989400	Flanking Active TSS	K562	blood
44	chr15:74989200-74989400	Enhancers	NHEK	skin
45	chr15:74989200-74989400	Enhancers	NHLF	lung
46	chr15:74989200-74989400	Enhancers	Osteobl	bone
47	chr15:74989200-74989600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
48	chr15:74989200-74989600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr15:74989200-74989600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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