Variant report

Variant	rs575725441
Chromosome Location	chr15:59372825-59372826
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34110	chr15:58949991-59381634	Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
3	esv1850946	chr15:59174539-59429160	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
4	nsv904271	chr15:59249584-59393011	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv520679	chr15:59268410-59376531	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv520872	chr15:59268410-59395184	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
7	nsv833025	chr15:59336148-59522176	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
8	nsv520769	chr15:59371663-59375103	Weak transcription Strong transcription ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59344400-59392800	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr15:59350800-59384600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr15:59351000-59373200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr15:59354000-59373200	Weak transcription	Small Intestine	intestine
5	chr15:59354000-59390600	Strong transcription	Primary B cells from peripheral blood	blood
6	chr15:59354400-59396800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr15:59355200-59373200	Weak transcription	Psoas Muscle	Psoas
8	chr15:59355400-59373000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr15:59355400-59392800	Strong transcription	Primary monocytes fromperipheralblood	blood
10	chr15:59355600-59373200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr15:59355600-59378400	Strong transcription	Osteobl	bone
12	chr15:59355600-59392800	Strong transcription	Liver	Liver
13	chr15:59355600-59396600	Weak transcription	Fetal Heart	heart
14	chr15:59355800-59386800	Weak transcription	Stomach Mucosa	stomach
15	chr15:59356200-59375400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr15:59359400-59373200	Weak transcription	Aorta	Aorta
17	chr15:59359400-59396600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr15:59359600-59373000	Weak transcription	Colonic Mucosa	Colon
19	chr15:59359600-59373200	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr15:59359600-59373200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr15:59359800-59373000	Weak transcription	Esophagus	oesophagus
22	chr15:59359800-59373000	Weak transcription	Stomach Smooth Muscle	stomach
23	chr15:59359800-59373200	Weak transcription	Lung	lung
24	chr15:59359800-59373200	Weak transcription	Rectal Smooth Muscle	rectum
25	chr15:59359800-59373200	Weak transcription	Right Ventricle	heart
26	chr15:59359800-59373200	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr15:59360000-59373200	Weak transcription	Brain Cingulate Gyrus	brain
28	chr15:59360200-59373200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr15:59360400-59373200	Weak transcription	Pancreas	Pancrea
30	chr15:59360400-59373200	Weak transcription	Spleen	Spleen
31	chr15:59360800-59373200	Weak transcription	NHLF	lung
32	chr15:59361200-59373000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr15:59361200-59373200	Weak transcription	Gastric	stomach
34	chr15:59362800-59373200	Weak transcription	Fetal Kidney	kidney
35	chr15:59363200-59373000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr15:59363200-59373200	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr15:59363200-59373200	Weak transcription	HepG2	liver
38	chr15:59363800-59373000	Weak transcription	Thymus	Thymus
39	chr15:59364000-59373000	Weak transcription	NHEK	skin
40	chr15:59364800-59392600	Strong transcription	Primary neutrophils fromperipheralblood	blood
41	chr15:59365200-59377200	Strong transcription	Dnd41	blood
42	chr15:59365400-59373400	Weak transcription	Fetal Brain Male	brain
43	chr15:59365400-59378000	Strong transcription	HUES64 Cell Line	embryonic stem cell
44	chr15:59365600-59373200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr15:59365800-59373000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr15:59365800-59373200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr15:59365800-59373200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr15:59365800-59390600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr15:59366000-59373000	Weak transcription	HSMMtube	muscle
50	chr15:59366000-59373200	Weak transcription	Ovary	ovary

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