Variant report

Variant	rs57574693
Chromosome Location	chr9:108419415-108419416
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:108415485..108417544-chr9:108419123..108420624,2	K562	blood:
2	chr9:108418364..108420760-chr9:108424450..108426444,2	K562	blood:
3	chr9:108418532..108421730-chr9:108444184..108446656,3	K562	blood:
4	chr9:108417392..108420233-chr9:108424521..108426938,4	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TAL2-1	chr9:108418650-108420264	NONHSAT133825

Variant related genes	Relation type
ENSG00000186051	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12348555	1.00[ASN][1000 genomes]
rs16924823	1.00[ASN][1000 genomes]
rs16924826	1.00[ASN][1000 genomes]
rs16924827	1.00[ASN][1000 genomes]
rs58612454	1.00[ASN][1000 genomes]
rs60923669	1.00[ASN][1000 genomes]
rs9696805	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519023	chr9:108371549-108454745	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108418400-108419800	Active TSS	Left Ventricle	heart
2	chr9:108418600-108419600	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
3	chr9:108418800-108419600	Bivalent Enhancer	Primary T helper naive cells from peripheral blood	blood
4	chr9:108419000-108419600	Flanking Bivalent TSS/Enh	Primary B cells from cord blood	blood
5	chr9:108419000-108419600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr9:108419000-108419600	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
7	chr9:108419000-108419600	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
8	chr9:108419000-108419600	Flanking Active TSS	K562	blood
9	chr9:108419000-108419800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr9:108419200-108419600	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
11	chr9:108419200-108419600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
12	chr9:108419200-108419600	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
13	chr9:108419200-108419600	Enhancers	Liver	Liver
14	chr9:108419200-108419600	Bivalent Enhancer	Brain Hippocampus Middle	brain
15	chr9:108419200-108419600	Flanking Active TSS	Fetal Brain Female	brain
16	chr9:108419200-108419600	Bivalent Enhancer	Fetal Intestine Large	intestine
17	chr9:108419200-108419600	Bivalent Enhancer	Fetal Intestine Small	intestine
18	chr9:108419200-108419600	Bivalent Enhancer	HepG2	liver
19	chr9:108419200-108419800	Flanking Bivalent TSS/Enh	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr9:108419200-108419800	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
21	chr9:108419200-108419800	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
22	chr9:108419200-108419800	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
23	chr9:108419200-108419800	Bivalent/Poised TSS	Fetal Muscle Trunk	muscle
24	chr9:108419200-108419800	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
25	chr9:108419200-108420200	Flanking Bivalent TSS/Enh	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr9:108419200-108420200	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr9:108419400-108419600	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
28	chr9:108419400-108419600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr9:108419400-108419600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr9:108419400-108419600	Flanking Bivalent TSS/Enh	Brain Angular Gyrus	brain
31	chr9:108419400-108419600	Bivalent Enhancer	Fetal Heart	heart
32	chr9:108419400-108419600	Bivalent Enhancer	Fetal Kidney	kidney
33	chr9:108419400-108419600	Active TSS	Skeletal Muscle Female	skeletal muscle
34	chr9:108419400-108419600	Enhancers	GM12878-XiMat	blood
35	chr9:108419400-108419800	Bivalent Enhancer	Primary T cells from cord blood	blood
36	chr9:108419400-108419800	Enhancers	Primary hematopoietic stem cells	blood
37	chr9:108419400-108419800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr9:108419400-108419800	Bivalent Enhancer	Brain Germinal Matrix	brain
39	chr9:108419400-108419800	Enhancers	Psoas Muscle	Psoas
40	chr9:108419400-108420000	Bivalent Enhancer	Primary B cells from peripheral blood	blood
41	chr9:108419400-108420400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr9:108419400-108420800	Bivalent Enhancer	Fetal Brain Male	brain

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