Variant report

Variant	rs575747950
Chromosome Location	chr1:56791476-56791477
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006422	chr1:56734772-56828606	Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv534972	chr1:56734772-56828606	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1015037	chr1:56784322-56814739	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv524251	chr1:56790773-56791609	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56765200-56795400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:56770400-56792200	Weak transcription	Right Ventricle	heart
3	chr1:56780400-56793600	Weak transcription	Liver	Liver
4	chr1:56782000-56797000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr1:56784200-56792200	Weak transcription	Lung	lung
6	chr1:56787000-56805600	Weak transcription	Left Ventricle	heart
7	chr1:56787200-56800600	Weak transcription	Fetal Muscle Leg	muscle
8	chr1:56787400-56791600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr1:56787400-56793000	Weak transcription	Fetal Heart	heart
10	chr1:56788400-56796200	Weak transcription	Psoas Muscle	Psoas
11	chr1:56790400-56794800	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr1:56791000-56791600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr1:56791000-56792400	Enhancers	Ovary	ovary
14	chr1:56791000-56792600	Enhancers	NHDF-Ad	bronchial
15	chr1:56791200-56791600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr1:56791200-56791800	Enhancers	HSMMtube	muscle
17	chr1:56791200-56792600	Enhancers	Osteobl	bone
18	chr1:56791200-56820800	Weak transcription	Aorta	Aorta
19	chr1:56791400-56791800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr1:56791400-56791800	Enhancers	NH-A	brain
21	chr1:56791400-56791800	Enhancers	NHLF	lung
22	chr1:56791400-56792000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr1:56791400-56792000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr1:56791400-56792200	Enhancers	HSMM	muscle
25	chr1:56791400-56792200	Enhancers	HUVEC	blood vessel
26	chr1:56791400-56792400	Enhancers	Muscle Satellite Cultured Cells	--

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