Variant report

Variant	rs575773059
Chromosome Location	chr15:92499686-92499687
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048635	chr15:92073294-92557339	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv534110	chr15:92397220-92592961	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv3387489	chr15:92499398-92501396	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92491600-92500600	Weak transcription	Psoas Muscle	Psoas
2	chr15:92493200-92500200	Enhancers	HMEC	breast
3	chr15:92495400-92505400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr15:92496000-92499800	Enhancers	Fetal Heart	heart
5	chr15:92496000-92500800	Enhancers	Left Ventricle	heart
6	chr15:92496000-92500800	Enhancers	Right Atrium	heart
7	chr15:92496400-92500800	Enhancers	Lung	lung
8	chr15:92496800-92500200	Enhancers	Right Ventricle	heart
9	chr15:92497000-92499800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr15:92497000-92499800	Enhancers	Esophagus	oesophagus
11	chr15:92497000-92500000	Enhancers	Adipose Nuclei	Adipose
12	chr15:92497000-92500200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr15:92498000-92500000	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr15:92498000-92500800	Enhancers	Ovary	ovary
15	chr15:92498000-92502200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr15:92498200-92499800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr15:92498200-92505200	Weak transcription	Colonic Mucosa	Colon
18	chr15:92498200-92555000	Weak transcription	Gastric	stomach
19	chr15:92498400-92505200	Weak transcription	Primary neutrophils fromperipheralblood	blood
20	chr15:92498600-92503000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr15:92498800-92500000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr15:92499000-92499800	Enhancers	Placenta Amnion	Placenta Amnion
23	chr15:92499000-92499800	Enhancers	A549	lung
24	chr15:92499000-92500000	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr15:92499000-92500000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr15:92499000-92500000	Enhancers	HUES48 Cell Line	embryonic stem cell
27	chr15:92499000-92500000	Enhancers	HUES64 Cell Line	embryonic stem cell
28	chr15:92499000-92500000	Enhancers	iPS-15b Cell Line	embryonic stem cell
29	chr15:92499000-92500000	Enhancers	iPS-18 Cell Line	embryonic stem cell
30	chr15:92499000-92500000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr15:92499000-92500000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr15:92499000-92500000	Weak transcription	Primary monocytes fromperipheralblood	blood
33	chr15:92499000-92500000	Enhancers	Osteobl	bone
34	chr15:92499000-92505200	Weak transcription	Monocytes-CD14+_RO01746	blood
35	chr15:92499200-92499800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr15:92499200-92499800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr15:92499200-92499800	Enhancers	Fetal Muscle Leg	muscle
38	chr15:92499200-92500000	Enhancers	H1 Cell Line	embryonic stem cell
39	chr15:92499200-92500000	Enhancers	HUES6 Cell Line	embryonic stem cell
40	chr15:92499200-92500000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr15:92499200-92500000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
42	chr15:92499200-92500000	Enhancers	Brain Substantia Nigra	brain
43	chr15:92499200-92500000	Enhancers	Fetal Brain Male	brain
44	chr15:92499200-92500000	Enhancers	NHDF-Ad	bronchial
45	chr15:92499200-92500800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr15:92499200-92504400	Weak transcription	Primary T helper cells PMA-I stimulated	--
47	chr15:92499400-92499800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr15:92499400-92499800	Enhancers	Brain Anterior Caudate	brain
49	chr15:92499400-92499800	Flanking Active TSS	Hela-S3	cervix
50	chr15:92499400-92499800	Enhancers	NHLF	lung

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