Variant report

Variant	rs57577841
Chromosome Location	chr4:81218929-81218930
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs28503933	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28755948	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6826137	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6849232	1.00[AMR][1000 genomes]
rs921999	0.83[AFR][1000 genomes]
rs9997635	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81190600-81223800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:81202200-81226200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:81206800-81222800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr4:81210000-81225800	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr4:81210400-81226200	Weak transcription	HSMM	muscle
6	chr4:81211400-81226200	Weak transcription	NH-A	brain
7	chr4:81217400-81223000	Weak transcription	NHDF-Ad	bronchial
8	chr4:81217600-81226200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr4:81217600-81226400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr4:81218000-81219000	Strong transcription	Osteobl	bone
11	chr4:81218000-81225600	Weak transcription	NHLF	lung
12	chr4:81218600-81219200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr4:81218800-81219000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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