Variant report

Variant	rs57579144
Chromosome Location	chr10:90609305-90609306
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:90599583..90601963-chr10:90608850..90611215,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17333991	1.00[AMR][1000 genomes]
rs56826535	1.00[AMR][1000 genomes]
rs57420309	1.00[AMR][1000 genomes]
rs60460622	1.00[AMR][1000 genomes]
rs7076139	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529324	chr10:90198865-90738588	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
4	nsv831942	chr10:90564697-90730352	Flanking Active TSS Genic enhancers Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90578600-90611200	Weak transcription	Esophagus	oesophagus
2	chr10:90606600-90611400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr10:90606600-90614200	Weak transcription	Gastric	stomach
4	chr10:90606800-90610000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr10:90606800-90611400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr10:90606800-90613200	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr10:90607000-90609600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr10:90607200-90610200	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr10:90607600-90611200	Weak transcription	Fetal Intestine Large	intestine
10	chr10:90607600-90612600	Enhancers	Hela-S3	cervix
11	chr10:90608000-90614800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
12	chr10:90608200-90609400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr10:90608200-90609400	Enhancers	NH-A	brain
14	chr10:90608200-90609800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr10:90608200-90613400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
16	chr10:90608600-90609400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr10:90608600-90609400	Enhancers	Rectal Mucosa Donor 31	rectum
18	chr10:90608600-90609800	Enhancers	NHDF-Ad	bronchial
19	chr10:90608600-90610000	Enhancers	Sigmoid Colon	Sigmoid Colon
20	chr10:90608600-90611200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr10:90608600-90612400	Weak transcription	Adipose Nuclei	Adipose
22	chr10:90608600-90613000	Enhancers	HMEC	breast
23	chr10:90608800-90609400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr10:90608800-90609400	Enhancers	NHLF	lung
25	chr10:90608800-90609800	Enhancers	Muscle Satellite Cultured Cells	--
26	chr10:90608800-90611200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr10:90608800-90611600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr10:90608800-90612800	Enhancers	NHEK	skin
29	chr10:90609000-90611200	Weak transcription	A549	lung
30	chr10:90609000-90611800	Active TSS	Primary B cells from cord blood	blood
31	chr10:90609200-90609400	Enhancers	Small Intestine	intestine
32	chr10:90609200-90609600	Enhancers	Rectal Mucosa Donor 29	rectum
33	chr10:90609200-90609600	Flanking Active TSS	Stomach Mucosa	stomach
34	chr10:90609200-90609800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr10:90609200-90609800	Enhancers	Fetal Lung	lung
36	chr10:90609200-90609800	Enhancers	Osteobl	bone
37	chr10:90609200-90610200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr10:90609200-90610200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr10:90609200-90610200	Weak transcription	GM12878-XiMat	blood
40	chr10:90609200-90610400	Weak transcription	Duodenum Mucosa	Duodenum
41	chr10:90609200-90611000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
42	chr10:90609200-90611400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr10:90609200-90611400	Weak transcription	HSMM	muscle

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