Variant report

Variant	rs57579172
Chromosome Location	chr16:58819788-58819789
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11860197	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11860591	0.86[AFR][1000 genomes]
rs13329832	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13334184	0.88[AFR][1000 genomes]
rs13334217	0.85[AFR][1000 genomes]
rs13334539	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13337082	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13338403	0.88[AFR][1000 genomes]
rs13339174	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13339583	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28392940	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28758631	0.85[AFR][1000 genomes]
rs58303389	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59143520	1.00[AFR][1000 genomes]
rs59486766	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59531351	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59724605	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60586863	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7198924	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs727483	0.90[AFR][1000 genomes]
rs73550866	0.88[AFR][1000 genomes]
rs73555739	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8044176	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8044182	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8044371	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8049925	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9921798	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9922224	0.81[AFR][1000 genomes]
rs9922993	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9923337	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9928525	0.90[AFR][1000 genomes]
rs9933939	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758427	chr16:58579005-58876037	Enhancers Strong transcription Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	esv2758650	chr16:58579005-58876037	ZNF genes & repeats Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1065296	chr16:58738198-58837859	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	n/a
4	nsv1065269	chr16:58743487-58972224	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv520998	chr16:58807542-58834219	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	esv3393800	chr16:58812500-58840628	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:58819200-58820400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

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