Variant report

Variant	rs575801344
Chromosome Location	chr2:184863877-184863878
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002074	chr2:184697897-184955330	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv875487	chr2:184737282-185186670	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv997475	chr2:184828307-184993186	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1013671	chr2:184830707-184882606	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1012023	chr2:184846782-184890545	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv583991	chr2:184855828-184954425	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv459975	chr2:184863746-184901392	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv583992	chr2:184863746-184901392	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:184860400-184864400	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr2:184861600-184864400	Enhancers	Fetal Intestine Small	intestine
3	chr2:184861800-184864200	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr2:184862000-184864000	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr2:184862400-184864400	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr2:184862600-184865000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr2:184862800-184864000	Flanking Active TSS	GM12878-XiMat	blood
8	chr2:184863200-184864000	Enhancers	Hela-S3	cervix
9	chr2:184863200-184864400	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr2:184863600-184864200	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr2:184863800-184864000	Enhancers	H9 Cell Line	embryonic stem cell
12	chr2:184863800-184864000	Enhancers	Colonic Mucosa	Colon
13	chr2:184863800-184864200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr2:184863800-184864200	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr2:184863800-184870600	Weak transcription	Fetal Intestine Large	intestine
16	chr2:184863800-184870600	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr2:184863800-184872000	Weak transcription	Pancreas	Pancrea

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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