Variant report

Variant	rs575813338
Chromosome Location	chr11:9980355-9980356
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv896988	chr11:9912052-10012511	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv896989	chr11:9951968-10059623	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	esv1819684	chr11:9973062-10012511	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
5	nsv982983	chr11:9980342-9981342	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9943400-9980600	Weak transcription	Primary T cells from cord blood	blood
2	chr11:9950200-9980400	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr11:9952800-9980400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr11:9952800-9980600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr11:9952800-9980600	Weak transcription	Spleen	Spleen
6	chr11:9952800-9995200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr11:9953000-9980400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr11:9953000-9980400	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr11:9953000-9980400	Weak transcription	Esophagus	oesophagus
10	chr11:9964800-9980400	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr11:9965200-9981000	Weak transcription	HUVEC	blood vessel
12	chr11:9967600-9980400	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr11:9967800-9980400	Weak transcription	Primary hematopoietic stem cells	blood
14	chr11:9968000-9980400	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr11:9968000-9980400	Weak transcription	Dnd41	blood
16	chr11:9968000-9984000	Weak transcription	Primary B cells from cord blood	blood
17	chr11:9968000-9984200	Weak transcription	Fetal Kidney	kidney
18	chr11:9968200-9980400	Weak transcription	Brain Angular Gyrus	brain
19	chr11:9968400-9980400	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr11:9969200-9980400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr11:9969400-9980400	Weak transcription	Brain Substantia Nigra	brain
22	chr11:9972800-9980600	Weak transcription	Gastric	stomach
23	chr11:9973000-9986000	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr11:9973200-9980400	Weak transcription	HepG2	liver
25	chr11:9973800-10010600	Weak transcription	Fetal Brain Male	brain
26	chr11:9974000-9980400	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr11:9974000-9980400	Weak transcription	Brain Anterior Caudate	brain
28	chr11:9974200-9980400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr11:9974200-9980800	Weak transcription	Brain Germinal Matrix	brain
30	chr11:9974200-9994400	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr11:9974200-9994600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr11:9974200-9994800	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr11:9974200-9999000	Weak transcription	Fetal Heart	heart
34	chr11:9974200-9999000	Weak transcription	HSMMtube	muscle
35	chr11:9974400-9980400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr11:9974400-9980400	Weak transcription	Brain Hippocampus Middle	brain
37	chr11:9974400-9980600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr11:9974400-9982800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr11:9975400-9985600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr11:9975600-9981000	Weak transcription	Duodenum Mucosa	Duodenum
41	chr11:9976200-9980400	Weak transcription	HSMM	muscle
42	chr11:9976400-9980400	Weak transcription	NHEK	skin
43	chr11:9976600-9980400	Weak transcription	A549	lung
44	chr11:9977000-9994400	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr11:9977200-9980400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr11:9977600-9982000	Weak transcription	Stomach Mucosa	stomach
47	chr11:9977800-9981600	Strong transcription	Fetal Lung	lung
48	chr11:9978200-9981600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr11:9978600-9980400	Weak transcription	H1 Cell Line	embryonic stem cell
50	chr11:9978600-9981800	Strong transcription	Left Ventricle	heart

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