Variant report

Variant	rs575828090
Chromosome Location	chr19:42066978-42066979
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:42065450..42067193-chr19:42070166..42071920,2	K562	blood:
2	chr19:41920096..41922257-chr19:42065475..42067160,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000248098	Chromatin interaction
ENSG00000007129	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv911771	chr19:41962486-42085873	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv911773	chr19:42001210-42085873	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv978751	chr19:42036596-42073874	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1057624	chr19:42057334-42152828	Transcr. at gene 5' and 3' Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv1058847	chr19:42057334-42172442	Bivalent/Poised TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv1063241	chr19:42057334-42175160	Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
7	nsv519408	chr19:42066279-42171906	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:42058000-42069600	Weak transcription	Pancreas	Pancrea
2	chr19:42062200-42070000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chr19:42062400-42069600	Weak transcription	Spleen	Spleen
4	chr19:42062600-42067400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
5	chr19:42062600-42067600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr19:42062600-42069400	Weak transcription	Thymus	Thymus
7	chr19:42062600-42069400	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr19:42063600-42068200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr19:42064000-42068000	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr19:42064000-42069000	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr19:42065000-42067200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr19:42065000-42069600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr19:42065800-42067000	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr19:42066000-42067000	Genic enhancers	Primary T cells fromperipheralblood	blood
15	chr19:42066400-42068800	Weak transcription	GM12878-XiMat	blood
16	chr19:42066400-42069600	Weak transcription	Lung	lung
17	chr19:42066400-42069800	Enhancers	Primary T cells from cord blood	blood
18	chr19:42066600-42067200	Genic enhancers	Primary T helper cells fromperipheralblood	blood
19	chr19:42066600-42067400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr19:42066600-42067800	Genic enhancers	Primary T helper cells PMA-I stimulated	--
21	chr19:42066600-42069600	Weak transcription	Primary hematopoietic stem cells	blood
22	chr19:42066600-42069600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr19:42066800-42067800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr19:42066800-42068400	Strong transcription	Primary B cells from peripheral blood	blood
25	chr19:42066800-42069400	Weak transcription	Primary B cells from cord blood	blood
26	chr19:42066800-42069400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr19:42066800-42069800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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