Variant report

Variant	rs575839089
Chromosome Location	chr15:41856790-41856791
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:41856390-41857223	PFSK-1	brain:	n/a	n/a
2	FOXP2	chr15:41856640-41856982	PFSK-1	brain:	n/a	n/a
3	POLR2A	chr15:41856229-41857524	K562	blood:	n/a	n/a
4	TEAD4	chr15:41856497-41856979	K562	blood:	n/a	n/a
5	FOXP2	chr15:41856641-41856971	PFSK-1	brain:	n/a	n/a
6	REST	chr15:41856176-41857362	H1-neurons	neurons:	n/a	chr15:41856892-41856905 chr15:41857166-41857184 chr15:41856895-41856908
7	REST	chr15:41856283-41856914	PFSK-1	brain:	n/a	chr15:41856892-41856905 chr15:41856895-41856908
8	YY1	chr15:41856440-41856937	H1-hESC	embryonic stem cell:	n/a	n/a
9	JUND	chr15:41856602-41856824	K562	blood:	n/a	chr15:41856666-41856675
10	CTCF	chr15:41856640-41856790	BE2_C	brain:	n/a	n/a
11	RCOR1	chr15:41856515-41857065	K562	blood:	n/a	n/a
12	EP300	chr15:41856532-41856873	H1-hESC	embryonic stem cell:	n/a	n/a
13	MAX	chr15:41856631-41857013	K562	blood:	n/a	n/a
14	ZBTB7A	chr15:41856716-41856960	K562	blood:	n/a	n/a
15	POLR2A	chr15:41856460-41856924	H1-neurons	neurons:	n/a	n/a
16	ZNF143	chr15:41856029-41856883	H1-hESC	embryonic stem cell:	n/a	n/a
17	NFIC	chr15:41856432-41856812	HepG2	liver:	n/a	n/a
18	POLR2A	chr15:41856018-41856995	K562	blood:	n/a	n/a
19	ZNF263	chr15:41856255-41857053	HEK293-T-REx	kidney:	n/a	chr15:41856483-41856492
20	HDAC2	chr15:41856486-41856941	HepG2	liver:	n/a	n/a
21	POLR2A	chr15:41856706-41857290	HepG2	liver:	n/a	n/a
22	POLR2A	chr15:41856213-41856924	H1-hESC	embryonic stem cell:	n/a	n/a
23	JUND	chr15:41856659-41856917	H1-hESC	embryonic stem cell:	n/a	chr15:41856666-41856675
24	POLR2A	chr15:41856429-41857237	H1-hESC	embryonic stem cell:	n/a	n/a
25	CBX3	chr15:41856619-41857025	K562	blood:	n/a	n/a
26	GTF2F1	chr15:41856598-41856918	H1-hESC	embryonic stem cell:	n/a	n/a
27	NFIC	chr15:41856347-41856889	ECC-1	luminal epithelium:	n/a	n/a
28	TEAD4	chr15:41856383-41856983	H1-hESC	embryonic stem cell:	n/a	n/a
29	RAD21	chr15:41856634-41856938	SK-N-SH_RA	brain:	n/a	chr15:41856829-41856842 chr15:41856830-41856839
30	RCOR1	chr15:41856551-41856893	K562	blood:	n/a	n/a
31	ARID3A	chr15:41856735-41856820	HepG2	liver:	n/a	n/a
32	POLR2A	chr15:41856414-41857086	H1-neurons	neurons:	n/a	n/a
33	CHD2	chr15:41856521-41856926	HepG2	liver:	n/a	n/a
34	RAD21	chr15:41856702-41856876	SK-N-SH_RA	brain:	n/a	chr15:41856829-41856842 chr15:41856830-41856839
35	YY1	chr15:41856341-41856906	H1-hESC	embryonic stem cell:	n/a	n/a
36	SP1	chr15:41856573-41857031	H1-hESC	embryonic stem cell:	n/a	chr15:41856720-41856731 chr15:41856793-41856802 chr15:41856851-41856865 chr15:41856708-41856719 chr15:41856789-41856803
37	MAZ	chr15:41856513-41857022	K562	blood:	n/a	n/a
38	EGR1	chr15:41856703-41856938	K562	blood:	n/a	chr15:41856788-41856801
39	POLR2A	chr15:41855023-41857639	H1-hESC	embryonic stem cell:	n/a	n/a
40	RCOR1	chr15:41856677-41856906	HepG2	liver:	n/a	n/a
41	POLR2A	chr15:41856338-41857405	H1-hESC	embryonic stem cell:	n/a	n/a
42	MAZ	chr15:41856600-41856946	HepG2	liver:	n/a	n/a
43	SIN3A	chr15:41856449-41856936	H1-hESC	embryonic stem cell:	n/a	chr15:41856895-41856908
44	TEAD4	chr15:41856419-41856833	H1-hESC	embryonic stem cell:	n/a	n/a
45	POLR2A	chr15:41856102-41857580	H1-hESC	embryonic stem cell:	n/a	n/a
46	CHD2	chr15:41856693-41856931	K562	blood:	n/a	n/a
47	BHLHE40	chr15:41856582-41856875	K562	blood:	n/a	n/a
48	POLR2A	chr15:41856154-41856968	K562	blood:	n/a	n/a
49	FOXA1	chr15:41856628-41856960	HepG2	liver:	n/a	n/a
50	MAZ	chr15:41856380-41857080	IMR90	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:41853373..41858542-chr15:41950830..41955637,10	K562	blood:
2	chr15:41849459..41853162-chr15:41854225..41857161,4	MCF-7	breast:

Variant related genes	Relation type
TYRO3	TF binding region
ENSG00000092445	Chromatin interaction
ENSG00000174197	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3359172	chr15:41856320-41857334	Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41852200-41877400	Weak transcription	Aorta	Aorta
2	chr15:41852400-41859600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr15:41852400-41860600	Weak transcription	HUVEC	blood vessel
4	chr15:41852400-41877200	Weak transcription	Colon Smooth Muscle	Colon
5	chr15:41852600-41856800	Enhancers	HepG2	liver
6	chr15:41852600-41858600	Weak transcription	NHDF-Ad	bronchial
7	chr15:41852600-41859600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr15:41852600-41877400	Weak transcription	HMEC	breast
9	chr15:41852800-41857600	Genic enhancers	Fetal Stomach	stomach
10	chr15:41852800-41877400	Weak transcription	NHEK	skin
11	chr15:41853000-41861800	Genic enhancers	Fetal Intestine Large	intestine
12	chr15:41853000-41862000	Genic enhancers	Fetal Intestine Small	intestine
13	chr15:41853200-41858200	Genic enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr15:41853200-41860200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr15:41853200-41861800	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr15:41853200-41863200	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr15:41853200-41872600	Weak transcription	Hela-S3	cervix
18	chr15:41853400-41857400	Enhancers	Ovary	ovary
19	chr15:41853400-41859400	Genic enhancers	HUES64 Cell Line	embryonic stem cell
20	chr15:41853400-41859800	Genic enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr15:41853400-41870600	Weak transcription	Stomach Mucosa	stomach
22	chr15:41853600-41857200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr15:41853600-41857600	Genic enhancers	HUES48 Cell Line	embryonic stem cell
24	chr15:41853600-41859800	Genic enhancers	H1 Cell Line	embryonic stem cell
25	chr15:41853600-41860000	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr15:41853600-41862200	Weak transcription	Duodenum Mucosa	Duodenum
27	chr15:41853800-41861400	Genic enhancers	Brain Dorsolateral Prefrontal Cortex	brain
28	chr15:41853800-41864000	Genic enhancers	Brain Cingulate Gyrus	brain
29	chr15:41854000-41860200	Strong transcription	Dnd41	blood
30	chr15:41854000-41860800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
31	chr15:41854000-41871400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr15:41854200-41857800	Enhancers	iPS-15b Cell Line	embryonic stem cell
33	chr15:41854200-41859600	Weak transcription	Pancreas	Pancrea
34	chr15:41854200-41877000	Weak transcription	Fetal Brain Male	brain
35	chr15:41854400-41857000	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr15:41854400-41857600	Strong transcription	Fetal Brain Female	brain
37	chr15:41854600-41857200	Enhancers	Fetal Thymus	thymus
38	chr15:41854800-41857000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr15:41854800-41857400	Genic enhancers	Fetal Muscle Leg	muscle
40	chr15:41855000-41857400	Genic enhancers	Fetal Lung	lung
41	chr15:41855000-41858200	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr15:41855000-41861400	Genic enhancers	Brain Anterior Caudate	brain
43	chr15:41855200-41857400	Enhancers	Spleen	Spleen
44	chr15:41855200-41858000	Enhancers	Fetal Kidney	kidney
45	chr15:41855200-41858000	Weak transcription	A549	lung
46	chr15:41855200-41860000	Weak transcription	Gastric	stomach
47	chr15:41855400-41856800	Genic enhancers	Brain Inferior Temporal Lobe	brain
48	chr15:41855400-41857400	Genic enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr15:41855400-41857400	Genic enhancers	Fetal Muscle Trunk	muscle
50	chr15:41855400-41857600	Enhancers	Placenta	Placenta

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