Variant report

Variant	rs57584254
Chromosome Location	chr6:5641283-5641284
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs200193	1.00[AMR][1000 genomes]
rs57515230	1.00[EUR][1000 genomes]
rs73360274	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916361	chr6:5315853-5695486	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv600887	chr6:5545046-5694713	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:5629200-5645600	Weak transcription	Right Ventricle	heart
2	chr6:5635000-5645000	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr6:5635200-5644800	Weak transcription	Left Ventricle	heart
4	chr6:5635400-5654000	Weak transcription	Right Atrium	heart
5	chr6:5636800-5642800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr6:5639400-5644800	Weak transcription	Fetal Heart	heart
7	chr6:5639800-5641400	ZNF genes & repeats	Aorta	Aorta
8	chr6:5639800-5641400	ZNF genes & repeats	Fetal Intestine Small	intestine
9	chr6:5640000-5641400	ZNF genes & repeats	Primary T cells from cord blood	blood
10	chr6:5640000-5641400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
11	chr6:5640000-5641400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr6:5640200-5641600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr6:5640400-5641400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
14	chr6:5640400-5641400	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
15	chr6:5640400-5641400	ZNF genes & repeats	Esophagus	oesophagus
16	chr6:5640400-5642000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
17	chr6:5640600-5641400	ZNF genes & repeats	Primary B cells from cord blood	blood
18	chr6:5640600-5641400	ZNF genes & repeats	Liver	Liver
19	chr6:5640600-5641400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
20	chr6:5640600-5641400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
21	chr6:5640600-5641600	ZNF genes & repeats	Primary B cells from peripheral blood	blood
22	chr6:5640600-5653000	Weak transcription	Gastric	stomach
23	chr6:5640800-5642000	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr6:5641000-5641400	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
25	chr6:5641000-5641400	ZNF genes & repeats	Stomach Smooth Muscle	stomach
26	chr6:5641000-5644800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr6:5641000-5645600	Weak transcription	Fetal Muscle Trunk	muscle
28	chr6:5641000-5650200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr6:5641000-5654000	Weak transcription	Pancreas	Pancrea
30	chr6:5641200-5641800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr6:5641200-5646600	Weak transcription	Ovary	ovary
32	chr6:5641200-5663400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr6:5641200-5664000	Weak transcription	Primary T cells fromperipheralblood	blood

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