Variant report

Variant	rs575845276
Chromosome Location	chr7:26970000-26970001
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:26966652..26968552-chr7:26968605..26970350,2	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025538	chr7:26482342-27376045	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
2	nsv538805	chr7:26482342-27376045	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
3	esv3375882	chr7:26969761-26989047	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26968000-26971000	Enhancers	Placenta Amnion	Placenta Amnion
2	chr7:26968200-26970800	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr7:26968400-26970200	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr7:26969000-26970000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr7:26969000-26970000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr7:26969400-26970000	Enhancers	H1 Cell Line	embryonic stem cell
7	chr7:26969400-26970800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr7:26969400-26970800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr7:26969600-26970000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr7:26969600-26970000	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr7:26969600-26970800	Enhancers	NHDF-Ad	bronchial
12	chr7:26969600-26970800	Enhancers	NHEK	skin
13	chr7:26969800-26970000	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr7:26969800-26970200	Enhancers	HMEC	breast
15	chr7:26969800-26970400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr7:26969800-26970400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr7:26969800-26970600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr7:26969800-26970600	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr7:26969800-26970600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr7:26969800-26970800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr7:26969800-26970800	Enhancers	Osteobl	bone
22	chr7:26969800-26971000	Enhancers	Fetal Lung	lung
23	chr7:26970000-26970200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr7:26970000-26970600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr7:26970000-26970600	Enhancers	Brain Substantia Nigra	brain
26	chr7:26970000-26970800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
27	chr7:26970000-26970800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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