Variant report

Variant	rs575862296
Chromosome Location	chr7:126995428-126995429
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:126994441..126996750-chr7:126997785..127000283,3	K562	blood:
2	chr7:126993441..126998972-chr7:127031083..127033725,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000048405	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526043	chr7:126985158-126998210	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1017145	chr7:126995304-127015459	Strong transcription Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126984400-127000800	Weak transcription	HSMMtube	muscle
2	chr7:126987800-127020600	Weak transcription	Spleen	Spleen
3	chr7:126988200-127001000	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr7:126988400-126995600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr7:126988400-126996000	Weak transcription	NHDF-Ad	bronchial
6	chr7:126988400-126996800	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr7:126988400-126997000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr7:126988400-126997000	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr7:126988400-126997000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr7:126988400-126997000	Weak transcription	Osteobl	bone
11	chr7:126988400-126998800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr7:126988400-126998800	Weak transcription	Placenta	Placenta
13	chr7:126988400-126999200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr7:126988400-126999200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr7:126988400-126999800	Weak transcription	Primary T cells from cord blood	blood
16	chr7:126988400-127000000	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr7:126988400-127000000	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr7:126988400-127000000	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr7:126988400-127000200	Weak transcription	Adipose Nuclei	Adipose
20	chr7:126988400-127000400	Weak transcription	Hela-S3	cervix
21	chr7:126988400-127000600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr7:126988400-127000600	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr7:126988400-127000600	Weak transcription	Fetal Intestine Large	intestine
24	chr7:126988400-127000800	Weak transcription	Primary B cells from peripheral blood	blood
25	chr7:126988400-127000800	Weak transcription	Brain Hippocampus Middle	brain
26	chr7:126988400-127000800	Weak transcription	Duodenum Mucosa	Duodenum
27	chr7:126988400-127000800	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr7:126988400-127001000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr7:126988400-127001000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr7:126988400-127001000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr7:126988400-127001000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr7:126988400-127001000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr7:126988400-127001000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr7:126988400-127001000	Weak transcription	Aorta	Aorta
35	chr7:126988400-127001000	Weak transcription	Brain Angular Gyrus	brain
36	chr7:126988400-127001000	Weak transcription	Esophagus	oesophagus
37	chr7:126988400-127001000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr7:126988400-127001000	Weak transcription	Fetal Stomach	stomach
39	chr7:126988400-127001000	Weak transcription	Left Ventricle	heart
40	chr7:126988400-127001000	Weak transcription	Lung	lung
41	chr7:126988400-127001000	Weak transcription	Right Ventricle	heart
42	chr7:126988400-127001000	Weak transcription	Thymus	Thymus
43	chr7:126988400-127001000	Weak transcription	NH-A	brain
44	chr7:126988400-127001000	Weak transcription	NHLF	lung
45	chr7:126988400-127001200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr7:126988400-127002200	Weak transcription	Fetal Heart	heart
47	chr7:126988400-127004400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr7:126988400-127006400	Weak transcription	Psoas Muscle	Psoas
49	chr7:126988400-127012600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr7:126988400-127013000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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