Variant report

Variant	rs575867140
Chromosome Location	chr11:75236128-75236129
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:75218923..75220446-chr11:75235371..75237646,2	K562	blood:
2	chr11:75108861..75111951-chr11:75234433..75238212,4	K562	blood:
3	chr11:75189541..75191420-chr11:75235512..75237815,2	K562	blood:
4	chr11:75045439..75047359-chr11:75234141..75236360,2	MCF-7	breast:
5	chr11:75137530..75143776-chr11:75234822..75239544,9	MCF-7	breast:
6	chr11:75109262..75112458-chr11:75235870..75238742,4	MCF-7	breast:
7	chr11:75189920..75194162-chr11:75235512..75239199,3	K562	blood:
8	chr11:75162095..75164647-chr11:75235506..75237767,3	MCF-7	breast:
9	chr11:75108861..75112568-chr11:75234338..75239079,8	K562	blood:

No data

Variant related genes	Relation type
ENSG00000254460	Chromatin interaction
ENSG00000199090	Chromatin interaction
ENSG00000206941	Chromatin interaction
ENSG00000149273	Chromatin interaction
ENSG00000149243	Chromatin interaction
ENSG00000158555	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
2	nsv897923	chr11:75129007-75302855	Active TSS Weak transcription Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases
3	esv3371732	chr11:75235729-75238277	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75232200-75236200	Weak transcription	Aorta	Aorta
2	chr11:75234200-75236600	Flanking Active TSS	Adipose Nuclei	Adipose
3	chr11:75234600-75236600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
4	chr11:75234800-75236600	Bivalent/Poised TSS	Fetal Brain Female	brain
5	chr11:75235000-75236400	Flanking Active TSS	GM12878-XiMat	blood
6	chr11:75235000-75236600	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
7	chr11:75235200-75236400	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
8	chr11:75235200-75236600	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
9	chr11:75235200-75236600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
10	chr11:75235200-75236600	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
11	chr11:75235200-75236600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
12	chr11:75235200-75236600	Flanking Active TSS	Hela-S3	cervix
13	chr11:75235200-75236600	Flanking Active TSS	HUVEC	blood vessel
14	chr11:75235200-75237600	Active TSS	Brain Hippocampus Middle	brain
15	chr11:75235200-75237800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
16	chr11:75235200-75237800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
17	chr11:75235400-75236200	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr11:75235400-75236200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr11:75235400-75236200	Flanking Active TSS	Brain Anterior Caudate	brain
20	chr11:75235400-75236200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
21	chr11:75235400-75236200	Flanking Bivalent TSS/Enh	Osteobl	bone
22	chr11:75235400-75236600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
23	chr11:75235400-75236600	Bivalent/Poised TSS	Colon Smooth Muscle	Colon
24	chr11:75235400-75236800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
25	chr11:75235400-75236800	Bivalent Enhancer	Stomach Mucosa	stomach
26	chr11:75235400-75238000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
27	chr11:75235600-75236200	Flanking Bivalent TSS/Enh	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr11:75235600-75236200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
29	chr11:75235600-75236200	Enhancers	Sigmoid Colon	Sigmoid Colon
30	chr11:75235600-75236400	Flanking Bivalent TSS/Enh	Primary monocytes fromperipheralblood	blood
31	chr11:75235600-75236600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
32	chr11:75235600-75236600	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr11:75235600-75236600	Flanking Bivalent TSS/Enh	Primary B cells from peripheral blood	blood
34	chr11:75235600-75236600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr11:75235600-75236600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr11:75235600-75236600	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
37	chr11:75235600-75236600	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
38	chr11:75235600-75236600	Bivalent/Poised TSS	HepG2	liver
39	chr11:75235600-75236600	Flanking Active TSS	NH-A	brain
40	chr11:75235600-75236800	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr11:75235600-75236800	Bivalent/Poised TSS	Thymus	Thymus
42	chr11:75235600-75237800	Active TSS	Right Atrium	heart
43	chr11:75235600-75238000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
44	chr11:75235800-75236200	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr11:75235800-75236200	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
46	chr11:75235800-75236200	Active TSS	Fetal Intestine Small	intestine
47	chr11:75235800-75236200	Flanking Bivalent TSS/Enh	Placenta	Placenta
48	chr11:75235800-75236200	Enhancers	Placenta Amnion	Placenta Amnion
49	chr11:75235800-75236400	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
50	chr11:75235800-75236400	Flanking Bivalent TSS/Enh	Colonic Mucosa	Colon

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