Variant report

Variant	rs57592074
Chromosome Location	chr2:113913928-113913929
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:30)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:30 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TBP	chr2:113913864-113914282	HepG2	liver:	n/a	n/a
2	POLR2A	chr2:113913788-113914377	HepG2	liver:	n/a	n/a
3	POLR2A	chr2:113913787-113914569	HepG2	liver:	n/a	n/a
4	FOXA1	chr2:113913795-113914444	HepG2	liver:	n/a	n/a
5	HDAC2	chr2:113913887-113915314	HepG2	liver:	n/a	n/a
6	NFYB	chr2:113913908-113914270	K562	blood:	n/a	n/a
7	HEY1	chr2:113913691-113915323	HepG2	liver:	n/a	chr2:113915191-113915206
8	TEAD4	chr2:113913734-113914731	HepG2	liver:	n/a	n/a
9	MAX	chr2:113913879-113915739	HepG2	liver:	n/a	n/a
10	FOXA1	chr2:113913913-113914395	HepG2	liver:	n/a	n/a
11	SP1	chr2:113913875-113914234	H1-hESC	embryonic stem cell:	n/a	n/a
12	POLR2A	chr2:113913911-113914262	HCT-116	colon:	n/a	n/a
13	HNF4A	chr2:113913806-113914291	HepG2	liver:	n/a	n/a
14	FOXA1	chr2:113913794-113914460	HepG2	liver:	n/a	n/a
15	NFIC	chr2:113913798-113914396	HepG2	liver:	n/a	n/a
16	FOXA1	chr2:113913783-113914319	HepG2	liver:	n/a	n/a
17	SP1	chr2:113913751-113914424	HepG2	liver:	n/a	n/a
18	MBD4	chr2:113913910-113914731	HepG2	liver:	n/a	n/a
19	HNF4A	chr2:113913878-113914276	HepG2	liver:	n/a	n/a
20	NFIC	chr2:113913797-113914411	HepG2	liver:	n/a	n/a
21	HNF4G	chr2:113913826-113914325	HepG2	liver:	n/a	n/a
22	EP300	chr2:113913847-113914424	HepG2	liver:	n/a	n/a
23	NFYB	chr2:113913811-113914211	GM12878	blood:	n/a	n/a
24	POLR2A	chr2:113913839-113914300	HepG2	liver:	n/a	n/a
25	EP300	chr2:113913902-113914363	HepG2	liver:	n/a	n/a
26	MYBL2	chr2:113913715-113914848	HepG2	liver:	n/a	n/a
27	HEY1	chr2:113913847-113914367	HepG2	liver:	n/a	n/a
28	MYBL2	chr2:113913666-113914965	HepG2	liver:	n/a	n/a
29	POLR2A	chr2:113913855-113914276	HCT-116	colon:	n/a	n/a
30	HDAC2	chr2:113913830-113914459	HepG2	liver:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:113912322..113918193-chr2:113953978..113958305,10	MCF-7	breast:
2	chr2:113913826..113916797-chr2:113930139..113933348,3	K562	blood:
3	chr2:113913193..113914847-chr2:113997714..113999799,2	K562	blood:
4	chr2:113882796..113885709-chr2:113913605..113916421,2	MCF-7	breast:
5	chr2:113913340..113916449-chr2:113931202..113934969,5	MCF-7	breast:
6	chr2:113913769..113918338-chr2:113954843..113958220,11	MCF-7	breast:

No data

Variant related genes	Relation type
PSD4	TF binding region
ENSG00000125637	Chromatin interaction
ENSG00000234174	Chromatin interaction
ENSG00000136689	Chromatin interaction
ENSG00000258395	Chromatin interaction
ENSG00000125618	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs34801108	1.00[AMR][1000 genomes]
rs35734363	1.00[AMR][1000 genomes]
rs35893082	1.00[AMR][1000 genomes]
rs4252035	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997348	chr2:113688093-113986508	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv582711	chr2:113895516-113984503	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	esv3374293	chr2:113913906-113916454	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:113912600-113914200	Enhancers	Stomach Mucosa	stomach
2	chr2:113913400-113914200	Enhancers	Liver	Liver
3	chr2:113913400-113914400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr2:113913400-113914600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr2:113913400-113914600	Enhancers	Pancreas	Pancrea
6	chr2:113913600-113914000	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
7	chr2:113913600-113914000	Enhancers	Pancreatic Islets	Pancreatic Islet
8	chr2:113913600-113914000	Weak transcription	Placenta	Placenta
9	chr2:113913600-113915000	Weak transcription	Gastric	stomach
10	chr2:113913800-113914000	Active TSS	ES-I3 Cell Line	embryonic stem cell
11	chr2:113913800-113914000	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr2:113913800-113914000	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr2:113913800-113914000	Enhancers	Primary T killer memory cells from peripheral blood	blood
14	chr2:113913800-113914000	Enhancers	K562	blood
15	chr2:113913800-113914200	Enhancers	Primary T cells from cord blood	blood
16	chr2:113913800-113914200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
17	chr2:113913800-113914400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr2:113913800-113914400	Enhancers	Primary T helper naive cells from peripheral blood	blood
19	chr2:113913800-113914400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
20	chr2:113913800-113914400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr2:113913800-113914600	Enhancers	Primary B cells from peripheral blood	blood
22	chr2:113913800-113914800	Flanking Active TSS	HepG2	liver

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