The 2.0 version of rSNPBase

Variant report

Variant rs57600778
Chromosome Location chr10:6551735-6551736
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:58 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr10:6499200-6562000 Weak transcription Brain Anterior Caudate brain
2 chr10:6501800-6557000 Weak transcription Sigmoid Colon Sigmoid Colon
3 chr10:6510000-6572000 Weak transcription iPS-15b Cell Line embryonic stem cell
4 chr10:6517200-6557800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
5 chr10:6518200-6556800 Weak transcription Fetal Intestine Large intestine
6 chr10:6526600-6553000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
7 chr10:6529000-6552800 Weak transcription Lung lung
8 chr10:6530400-6552600 Weak transcription K562 blood
9 chr10:6533800-6552800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
10 chr10:6535400-6553400 Weak transcription Gastric stomach
11 chr10:6536600-6552800 Weak transcription Fetal Intestine Small intestine
12 chr10:6537400-6552800 Weak transcription Fetal Stomach stomach
13 chr10:6537600-6552600 Weak transcription HUES48 Cell Line embryonic stem cell
14 chr10:6538200-6552800 Weak transcription H1 Cell Line embryonic stem cell
15 chr10:6540800-6552200 Weak transcription HUES64 Cell Line embryonic stem cell
16 chr10:6540800-6552800 Weak transcription H9 Cell Line embryonic stem cell
17 chr10:6540800-6556600 Weak transcription Fetal Muscle Trunk muscle
18 chr10:6541400-6552800 Weak transcription Fetal Muscle Leg muscle
19 chr10:6541600-6555200 Strong transcription Primary T cells from cord blood blood
20 chr10:6542000-6553000 Strong transcription Fetal Thymus thymus
21 chr10:6543000-6555000 Strong transcription Primary T helper naive cells fromperipheralblood blood
22 chr10:6543200-6554600 Weak transcription Pancreatic Islets Pancreatic Islet
23 chr10:6544200-6552800 Weak transcription Skeletal Muscle Male skeletal muscle
24 chr10:6544600-6552800 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
25 chr10:6544600-6553000 Weak transcription Pancreas Pancrea
26 chr10:6544600-6558200 Weak transcription Breast Myoepithelial Primary Cells Breast
27 chr10:6545200-6552800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
28 chr10:6545200-6554800 Weak transcription Psoas Muscle Psoas
29 chr10:6546400-6552800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
30 chr10:6546800-6552800 Weak transcription NHEK skin
31 chr10:6546800-6561200 Weak transcription HMEC breast
32 chr10:6547200-6554200 Strong transcription Primary Natural Killer cells fromperipheralblood blood
33 chr10:6547600-6552200 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
34 chr10:6548000-6552800 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
35 chr10:6548600-6554800 Strong transcription Dnd41 blood
36 chr10:6549200-6552600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
37 chr10:6549400-6553200 Weak transcription ES-WA7 Cell Line embryonic stem cell
38 chr10:6549600-6552600 Weak transcription HUES6 Cell Line embryonic stem cell
39 chr10:6549800-6562400 Weak transcription Brain Cingulate Gyrus brain
40 chr10:6550000-6554200 Strong transcription Primary T cells fromperipheralblood blood
41 chr10:6550400-6553600 Strong transcription Primary T killer memory cells from peripheral blood blood
42 chr10:6550400-6562600 Weak transcription Brain Substantia Nigra brain
43 chr10:6550600-6552000 Weak transcription Primary T killer naive cells fromperipheralblood blood
44 chr10:6550600-6554600 Strong transcription Primary T helper cells fromperipheralblood blood
45 chr10:6550600-6555400 Strong transcription Primary T regulatory cells fromperipheralblood blood
46 chr10:6550600-6555400 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood
47 chr10:6550600-6562400 Weak transcription Brain Hippocampus Middle brain
48 chr10:6550800-6552800 Weak transcription Thymus Thymus
49 chr10:6550800-6554200 Strong transcription Primary T helper cells PMA-I stimulated --
50 chr10:6550800-6554200 Strong transcription Primary T helper 17 cells PMA-I stimulated --

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Last update: Aug 31, 2015