Variant report

Variant	rs576025201
Chromosome Location	chr8:126453199-126453200
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr8:126451435-126453300	HCT-116	colon:	n/a	n/a
2	POLR2A	chr8:126453007-126453224	Hela-S3	cervix:	n/a	n/a
3	POLR2A	chr8:126451437-126453693	HL-60	blood:	n/a	n/a
4	JUND	chr8:126451409-126453313	HCT-116	colon:	n/a	n/a
5	POLR2A	chr8:126440811-126453303	HCT-116	colon:	n/a	n/a
6	POLR2A	chr8:126443517-126453304	HepG2	liver:	n/a	n/a
7	FOSL1	chr8:126451441-126453353	HCT-116	colon:	n/a	n/a
8	POLR2A	chr8:126451679-126453299	GM12878	blood:	n/a	n/a
9	POLR2A	chr8:126451643-126453320	GM12892	blood:	n/a	n/a
10	MAX	chr8:126451413-126453303	HCT-116	colon:	n/a	chr8:126452445-126452456
11	SP1	chr8:126451404-126453333	HCT-116	colon:	n/a	n/a
12	POLR2A	chr8:126440867-126453568	IMR90	lung:	n/a	n/a
13	SPI1	chr8:126451631-126453314	HL-60	blood:	n/a	n/a
14	RAD21	chr8:126451740-126453206	IMR90	lung:	n/a	n/a
15	SIN3AK20	chr8:126451498-126453347	HCT-116	colon:	n/a	n/a
16	MAX	chr8:126451479-126453254	HCT-116	colon:	n/a	chr8:126452445-126452456
17	POLR2A	chr8:126443504-126453314	A549	lung:	n/a	n/a
18	CBX3	chr8:126451425-126453375	HCT-116	colon:	n/a	n/a
19	POLR2A	chr8:126451558-126453433	H1-hESC	embryonic stem cell:	n/a	n/a
20	POLR2A	chr8:126451698-126453343	H1-hESC	embryonic stem cell:	n/a	n/a
21	RAD21	chr8:126451421-126453364	HCT-116	colon:	n/a	n/a
22	POLR2A	chr8:126449286-126453223	MCF10A-Er-Src	breast:	n/a	n/a
23	POLR2A	chr8:126451421-126453714	HL-60	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:126450829..126453336-chr8:126485586..126487093,2	MCF-7	breast:
2	chr8:126452402..126454551-chr8:126832949..126835244,2	K562	blood:

Variant related genes	Relation type
RN7SL590P	TF binding region

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3328739	chr8:126452520-126454568	Weak transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:126447000-126458800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:126448000-126453400	Weak transcription	Stomach Mucosa	stomach
3	chr8:126448600-126457800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr8:126448600-126458600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr8:126449000-126459000	Weak transcription	HSMM	muscle
6	chr8:126449200-126457200	Weak transcription	Fetal Heart	heart
7	chr8:126449400-126458600	Weak transcription	Esophagus	oesophagus
8	chr8:126450600-126453200	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr8:126450600-126457600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr8:126450600-126463800	Weak transcription	Hela-S3	cervix
11	chr8:126450800-126453200	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr8:126450800-126454600	Weak transcription	Pancreas	Pancrea
13	chr8:126450800-126457000	Weak transcription	K562	blood
14	chr8:126450800-126457200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr8:126450800-126457400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr8:126450800-126457600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr8:126450800-126457800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr8:126450800-126458000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr8:126450800-126458600	Weak transcription	Stomach Smooth Muscle	stomach
20	chr8:126450800-126458800	Weak transcription	Fetal Stomach	stomach
21	chr8:126451000-126454400	Weak transcription	Duodenum Mucosa	Duodenum
22	chr8:126451000-126454600	Weak transcription	Primary B cells from cord blood	blood
23	chr8:126451000-126457000	Weak transcription	Fetal Muscle Trunk	muscle
24	chr8:126451000-126457400	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr8:126451000-126457600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr8:126451000-126458400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr8:126451000-126462400	Weak transcription	Liver	Liver
28	chr8:126451200-126454400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr8:126451200-126458200	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr8:126451600-126453200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr8:126451600-126453200	Weak transcription	Fetal Intestine Small	intestine
32	chr8:126451600-126457600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr8:126451800-126453200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr8:126451800-126453200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr8:126451800-126453200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr8:126451800-126453200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr8:126451800-126453200	Enhancers	Skeletal Muscle Female	skeletal muscle
38	chr8:126451800-126453200	Enhancers	NHDF-Ad	bronchial
39	chr8:126451800-126453200	Enhancers	NHLF	lung
40	chr8:126451800-126453200	Enhancers	Osteobl	bone
41	chr8:126451800-126453400	Enhancers	Muscle Satellite Cultured Cells	--
42	chr8:126451800-126453800	Enhancers	Skeletal Muscle Male	skeletal muscle
43	chr8:126452000-126453200	Enhancers	Adipose Nuclei	Adipose
44	chr8:126452000-126453200	Enhancers	Fetal Muscle Leg	muscle
45	chr8:126452000-126457800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
46	chr8:126452200-126453200	Enhancers	Lung	lung
47	chr8:126452200-126457200	Weak transcription	Right Ventricle	heart
48	chr8:126452200-126457400	Weak transcription	H1 Cell Line	embryonic stem cell
49	chr8:126452200-126457400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr8:126452200-126457800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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