Variant report

Variant	rs576063996
Chromosome Location	chr6:150732115-150732116
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150725228..150728366-chr6:150731535..150733828,3	K562	blood:
2	chr6:150731412..150734298-chr6:150879211..150881939,2	K562	blood:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022455	chr6:150727247-150755933	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1020067	chr6:150730783-150870708	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150725400-150733000	Weak transcription	Stomach Mucosa	stomach
2	chr6:150727600-150734000	Enhancers	Osteobl	bone
3	chr6:150728400-150732400	Enhancers	Fetal Lung	lung
4	chr6:150729800-150732200	Enhancers	Liver	Liver
5	chr6:150730000-150732200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:150730200-150732800	Enhancers	Fetal Heart	heart
7	chr6:150730200-150732800	Enhancers	Fetal Kidney	kidney
8	chr6:150730400-150732200	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr6:150730400-150732400	Enhancers	Fetal Stomach	stomach
10	chr6:150730400-150733000	Enhancers	HSMMtube	muscle
11	chr6:150730600-150732400	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr6:150730600-150732600	Enhancers	Colon Smooth Muscle	Colon
13	chr6:150730600-150733600	Enhancers	NH-A	brain
14	chr6:150730800-150732600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr6:150731000-150735200	Weak transcription	NHEK	skin
16	chr6:150731000-150739000	Weak transcription	Hela-S3	cervix
17	chr6:150731200-150732600	Weak transcription	Gastric	stomach
18	chr6:150731200-150733600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr6:150731200-150740200	Weak transcription	Spleen	Spleen
20	chr6:150731400-150732600	Weak transcription	Psoas Muscle	Psoas
21	chr6:150731400-150733200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr6:150731400-150734800	Weak transcription	Fetal Muscle Trunk	muscle
23	chr6:150731600-150732400	Enhancers	HSMM	muscle
24	chr6:150731600-150732600	Enhancers	Muscle Satellite Cultured Cells	--
25	chr6:150731800-150732400	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr6:150731800-150732400	Enhancers	Skeletal Muscle Male	skeletal muscle
27	chr6:150731800-150733800	Weak transcription	Brain Germinal Matrix	brain
28	chr6:150731800-150734600	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr6:150732000-150732200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr6:150732000-150732400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr6:150732000-150740000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links