Variant report

Variant	rs57607193
Chromosome Location	chr6:79865208-79865209
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs28562383	1.00[AMR][1000 genomes]
rs59094738	1.00[AMR][1000 genomes]
rs6927437	1.00[AMR][1000 genomes]
rs7741344	1.00[AMR][1000 genomes]
rs7759413	1.00[AMR][1000 genomes]
rs7761763	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830706	chr6:79825910-79994878	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1028607	chr6:79853272-80767716	Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:79862200-79867000	Weak transcription	A549	lung
2	chr6:79862600-79866400	Weak transcription	HepG2	liver
3	chr6:79863600-79867600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr6:79863600-79868400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr6:79864000-79867800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr6:79864000-79868400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr6:79864200-79867800	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr6:79864200-79868000	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr6:79864200-79868400	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr6:79864400-79867800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr6:79864400-79867800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr6:79864600-79868000	Weak transcription	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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