Variant report

Variant	rs576072430
Chromosome Location	chr12:22004510-22004511
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv557741	chr12:21578559-22169854	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1051073	chr12:21910875-22271209	Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv470275	chr12:21938544-22126314	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv1847099	chr12:22003544-22035425	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:21973800-22025400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr12:21985400-22005000	Weak transcription	NHLF	lung
3	chr12:21985800-22004800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr12:21995600-22022200	Weak transcription	Stomach Smooth Muscle	stomach
5	chr12:21995600-22034800	Weak transcription	Colon Smooth Muscle	Colon
6	chr12:21995800-22022600	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr12:21997600-22016600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr12:21999200-22015400	Weak transcription	Fetal Muscle Leg	muscle
9	chr12:22001400-22011400	Weak transcription	Fetal Muscle Trunk	muscle
10	chr12:22003400-22008600	Weak transcription	Pancreas	Pancrea
11	chr12:22003400-22014200	Weak transcription	Left Ventricle	heart
12	chr12:22003400-22015800	Weak transcription	Right Ventricle	heart
13	chr12:22003400-22026600	Weak transcription	Psoas Muscle	Psoas
14	chr12:22003600-22014600	Weak transcription	Adipose Nuclei	Adipose
15	chr12:22003600-22022400	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr12:22004000-22005000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr12:22004000-22007000	Strong transcription	Liver	Liver
18	chr12:22004000-22010400	Weak transcription	Fetal Heart	heart
19	chr12:22004400-22004800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr12:22004400-22004800	Enhancers	Muscle Satellite Cultured Cells	--
21	chr12:22004400-22005800	Weak transcription	Skeletal Muscle Female	skeletal muscle

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